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Report for CCDS22496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22496.1 Public Mus musculus 8 Or7c19 23 108 98 CCDS HistoryNCBI Gene:258858Re-query CCDS DB by CCDS ID:22496.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070849.5 ENSMUSP00000077921.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070849.5Link to Ensembl Protein Viewer:ENSMUSP00000077921.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000070849Re-query CCDS DB by Protein ID:ENSMUSP00000077921
Original member Current member EBI ENSMUST00000218663.1 ENSMUSP00000151714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218663.1Link to Ensembl Protein Viewer:ENSMUSP00000151714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218663Re-query CCDS DB by Protein ID:ENSMUSP00000151714
Original member Current member NCBI NM_146859.2 NP_667070.1 Accepted alive Link to Nucleotide Sequence:NM_146859.2Link to Protein Sequence:NP_667070.1Re-query CCDS DB by Nucleotide ID:NM_146859Re-query CCDS DB by Protein ID:NP_667070Link to BLAST:NP_667070.1

Chromosomal Locations for CCDS 22496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85230497 85231435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAACCAGAAAACCACACAGGGATTCCAGAATTTTACCTGTTGGGACTTTCAGAGAATCCAGAGATTC
AGTCCGTTCTCTTTGGGCTGTTCTTGTCTTTGTACTTGGTGACCGTCTTTGGGAACCTGCTCATCATCCT
GGCCATTGTCTCTGACCCTAAGCTTCACACACCAATGTATTTATTCCTCTCTAACCTATCCTTCTCTGAC
ATCTGCTTCACCTCTACCACTGTCCCAAAGATGCTGCTGGGCATCCAGACTCAGAGTAAGCTCATCACCT
ATGCAGGCTGCATCACACAGATGTACTTCTTCACAGTCTTCGGACTTCTGGACAATCTGCTTCTGACTGT
GATGGCATATGACCGCTTTGTGGCCATCTGCCACCCCTTGCACTATACAGTGCTCATGAACCCTAAGCTC
TGTTCCCAGCTACTTCTCCTGGCATGGCTTATAAGCATACTTGGAGCCCTGCCTGAGAGTTTAACTGCAC
TGAGACTGTCTTTCTGTGCAGTCGTGGAAATTCCACACTATTTTTGTGAACTCCCTGAAGTCCTTAAGCT
AGCCTGCTCTGACACCTTCATCAATAACGTTGTGTTATATATTGTAACAGGCATCATGGGCTTTTTTCCT
CTTGCTGGGATACTTTTCTCTTACTCTCAAATTGTGACATCTGTCTTGCGGATTTCAACAGTGGGAGGAA
AGTATAAAGCGTTTTCCACCTGTGGTTCTCATCTCTCAGTTGTGTCTCTGTTCTATGGAACCTGCCTGGG
GGTGTACCTCAGTTCTATCTGGACACAGGCTTCTTGGGCAGGGGTGTTTGCTTCTGTTCTGTACACTGTG
GTCACTCCCATGATGAACCCTTTCATCTATAGCCTGAGGAACAGGGACATGAAGAGAGCCCTGAATACAC
TACTATGTAGTGTGCCATCCTCATCTTGA

Translation (312 aa):
MEPENHTGIPEFYLLGLSENPEIQSVLFGLFLSLYLVTVFGNLLIILAIVSDPKLHTPMYLFLSNLSFSD
ICFTSTTVPKMLLGIQTQSKLITYAGCITQMYFFTVFGLLDNLLLTVMAYDRFVAICHPLHYTVLMNPKL
CSQLLLLAWLISILGALPESLTALRLSFCAVVEIPHYFCELPEVLKLACSDTFINNVVLYIVTGIMGFFP
LAGILFSYSQIVTSVLRISTVGGKYKAFSTCGSHLSVVSLFYGTCLGVYLSSIWTQASWAGVFASVLYTV
VTPMMNPFIYSLRNRDMKRALNTLLCSVPSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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