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Report for CCDS16368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16368.1 Public Mus musculus 2 Or4c118 23 108 98 CCDS HistoryNCBI Gene:258894Re-query CCDS DB by CCDS ID:16368.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217342.1 ENSMUSP00000150550.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217342.1Link to Ensembl Protein Viewer:ENSMUSP00000150550.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217342Re-query CCDS DB by Protein ID:ENSMUSP00000150550
Original member Current member NCBI NM_146892.2 NP_667103.2 Accepted alive Link to Nucleotide Sequence:NM_146892.2Link to Protein Sequence:NP_667103.2Re-query CCDS DB by Nucleotide ID:NM_146892Re-query CCDS DB by Protein ID:NP_667103Link to BLAST:NP_667103.2

Chromosomal Locations for CCDS 16368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89144086 89145021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCTTAACCAGAGCTTTGTCACTGAGTTCATACTTCTGGGACTTTCACAGAACCCAAAAGTGGAGAAAA
TA
CTGTTTGTTTTGTTTTTCTTGGTCTACCTTGCAACTATTGGAGGCAACATAGTAATTGTGGTAACAAT
C
TTATTCAGTCCTGCACTTTTTGGCTCCCCCATGTACTTCTTTTTGTCTTTCCTTTCATTCCTGGATGCA
TGC
ATTTCTTCTGTAATCACACCAAAGATGATTGTAGACTTCTTCTATGAAACGAAGACCATCTCCTTTG
AA
TGTTGTATGGTACAACTTTTTGCTGTCCACTTCTTCACTGGGGTGGAAGTGATTGTCCTGTCAGCCAT
G
GCCTATGACCGCTATGTGGCTATTTGCAAGCCCTTGCACTACTCTTCCATCATGAACCAGAGACTCTGT
GTC
ATTCTGGTAGGGATAGCCTGGGCAGGAGGCTTCTTGCATTCTATCACACAAATTATCTTCACTTTGC
AG
CTGCCCTTCTGTGGCCCCAATGTTATTGAGCATTTCATATGTGACTTGTTCCCATTACTAAAGCTAGC
C
TGCACCAATACACACATTTTTGTTATTTTGGTGTTTGCCAACAGTGGTTCTATCTGCATCATTATTTTT
TCC
TTATTGCTTGTTTCCTATGGTGTCATCTTATTCTCTCTGAGATCTCACAGTTCTGAAGGGCGGAGTA
AA
GCTCTATCTACCTGTGGATCCCACATTACTGTTGTGCTTTTGTTCTTTGTCCCTTGCATATTAATATA
T
GCACGAAATACTTCTGCATTCTCATTTGAGAAAAATGTGTTTATATTTGCTGATGTACTGACACCATTA
CTA
AATCCTATGGTATACACTTTCAGGAATAAGGAAATGAAGAATGCCATCAAAAAAATATGGAGGAGAT
TG
TTTAATATTTCTGATAAGCATTAA


Translation (311 aa):
MLNQSFVTEFILLGLSQNPKVEKILFVLFFLVYLATIGGNIVIVVTILFSPALFGSPMYFFLSFLSFLDA
C
ISSVITPKMIVDFFYETKTISFECCMVQLFAVHFFTGVEVIVLSAMAYDRYVAICKPLHYSSIMNQRLC
V
ILVGIAWAGGFLHSITQIIFTLQLPFCGPNVIEHFICDLFPLLKLACTNTHIFVILVFANSGSICIIIF
S
LLLVSYGVILFSLRSHSSEGRSKALSTCGSHITVVLLFFVPCILIYARNTSAFSFEKNVFIFADVLTPL
L
NPMVYTFRNKEMKNAIKKIWRRLFNISDKH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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