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Report for CCDS16364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16364.1 Public Mus musculus 2 Or4c114 23 108 98 CCDS HistoryNCBI Gene:258901Re-query CCDS DB by CCDS ID:16364.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099797.1 ENSMUSP00000097385.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099797.1Link to Ensembl Protein Viewer:ENSMUSP00000097385.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099797Re-query CCDS DB by Protein ID:ENSMUSP00000097385
Original member Current member EBI ENSMUST00000215225.2 ENSMUSP00000149573.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215225.2Link to Ensembl Protein Viewer:ENSMUSP00000149573.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215225Re-query CCDS DB by Protein ID:ENSMUSP00000149573
Original member Current member EBI ENSMUST00000217421.1 ENSMUSP00000150043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217421.1Link to Ensembl Protein Viewer:ENSMUSP00000150043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217421Re-query CCDS DB by Protein ID:ENSMUSP00000150043
Original member Current member EBI ENSMUST00000214442.1 ENSMUSP00000150101.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214442.1Link to Ensembl Protein Viewer:ENSMUSP00000150101.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214442Re-query CCDS DB by Protein ID:ENSMUSP00000150101
Original member Current member EBI ENSMUST00000213724.1 ENSMUSP00000151003.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213724.1Link to Ensembl Protein Viewer:ENSMUSP00000151003.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213724Re-query CCDS DB by Protein ID:ENSMUSP00000151003
Original member Current member NCBI NM_146899.2 NP_667110.2 Accepted alive Link to Nucleotide Sequence:NM_146899.2Link to Protein Sequence:NP_667110.2Re-query CCDS DB by Nucleotide ID:NM_146899Re-query CCDS DB by Protein ID:NP_667110Link to BLAST:NP_667110.2

Chromosomal Locations for CCDS 16364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89074154 89075089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCAAAACCAGAGCTTTGTCACTGAGTTCATACTCCTGGGACTTTCACAGAACCTGTATGTGGAGAAAA
TACTATTTGTTTTATTTTTGCTGATCTACCTTGCAACTATTGGGGGCAACATGATTATTGTGGTGACCAT
CATCTACAGCCCTGCACTGCTGGGCTCCCCCATGTACTTCTTCTTGATATTCCTGTCCTTACTGGATGCA
TTAACTTCTTCTACTGTCACCCCAAAGATAATTGTAGACTGCTTCTATGAAAGGAAGACCATCTCCTTTG
AATGTTGCATGACACAACTGTTTACAGTCCACTTCTTCACTGGGGCAGAAGTGATTGTCTTGGCATCCAT
GGCCTATGACCGCTATGTGGCCATTTGCAAACCCCTTCACTACTCTTCCATCATGACTCGGAGGCTCTGT
GGAATTTTGGTAGTGGTGTCTTGGGCAGGAGGCTTCTTGCATTCTATCATACAAATCATCTTCACATTGC
AGCTGCCTTTCTGTGGCCCCAATGTCATTGATCATTACATGTGTGACTTGTTCCCATTACTGAAGCTTGC
CTGCACAGACACACACATTTATGTCCTTTTGATATTTGCCAACAGTGGTGCTATATGCATTATAATCTTC
TCCTTATTGCTTGTCTCTTATGGTATCATCTTGTTCTCTCTGAGAGCCCACAGTTCTGAAGGTCGGCGTA
AAGCTCTCTCCACCTGTGGGTCCCATATAATTGTTGTGCTTTTGTGCTTTGTCCCATGCCTATTAATATA
TGCAAGACCTACTTCTGCATTCTCCTTTGAGAAAAACATGCTTATATTTATCAATGTCCTTACACCATTG
CTAAATCCTATGGTTTACACTTTCAGGAATAAGGAAATGAAGAATGCTATCGGAAAAATGTGGAAGAGAT
TAATAGTGGTTTCTGATAAATTTTAA

Translation (311 aa):
MQNQSFVTEFILLGLSQNLYVEKILFVLFLLIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDA
LTSSTVTPKIIVDCFYERKTISFECCMTQLFTVHFFTGAEVIVLASMAYDRYVAICKPLHYSSIMTRRLC
GILVVVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYMCDLFPLLKLACTDTHIYVLLIFANSGAICIIIF
SLLLVSYGIILFSLRAHSSEGRRKALSTCGSHIIVVLLCFVPCLLIYARPTSAFSFEKNMLIFINVLTPL
LNPMVYTFRNKEMKNAIGKMWKRLIVVSDKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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