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Report for CCDS16383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16383.1 Public Mus musculus 2 Or4a71 23 108 98 CCDS HistoryNCBI Gene:258971Re-query CCDS DB by CCDS ID:16383.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099775.1 ENSMUSP00000097363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099775.1Link to Ensembl Protein Viewer:ENSMUSP00000097363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099775Re-query CCDS DB by Protein ID:ENSMUSP00000097363
Original member Current member EBI ENSMUST00000144885.2 ENSMUSP00000149464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144885.2Link to Ensembl Protein Viewer:ENSMUSP00000149464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144885Re-query CCDS DB by Protein ID:ENSMUSP00000149464
Original member Current member NCBI NM_146969.1 NP_667180.1 Accepted alive Link to Nucleotide Sequence:NM_146969.1Link to Protein Sequence:NP_667180.1Re-query CCDS DB by Nucleotide ID:NM_146969Re-query CCDS DB by Protein ID:NP_667180Link to BLAST:NP_667180.1

Chromosomal Locations for CCDS 16383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89527491 89528408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGGACAGAGCTACAATGTCACAGAATTCATTTTTGTGGACCTTACTCAAGATCCTGCTGGGAAAAAAG
CCTTATTTGTCTTGTTTTCACTTACCTACATTGTGACAATGCTGGGTAACCTGCTCATTGCAGTGACGGT
GATTGCCAGCCCTTCCTTAAACTCCCCAATGTACTTCTTTCTTGCCTGTCTGTCAGTCCTGGATGCTTTT
TATTGCAATACTATCTCACCCAATTTGATTATAGGTTTATTAAAAGATAAAAATAATATCTCCTTCAGAG
CTTGCATGCTCCAGCTCTTTGTAGAGCACTTATTTGGAGGTGTTGAGGTCTTCCTTCTGGTATTCATGGC
CTATGATCGCTATGTGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCAGCGGGTGTGCATT
CTTCTGTTGCTGGTAGCTGGAGTTGGAGGCATCTTACACTCATTGATTCAAGTTCTCACTGTGTATAAAC
TTCCTTTTTGTGGTCCCAATGTCATTGATCACTTCATGTGTGATATGAATCCATTACTGGGACTTGCATG
CACTGACACCTACTTCCTTGGCATCACTGTCATTGCCAATGGTGGAGTAATCTGTGTGGGAATTTTCACC
TTTCTCTTAGTCTCCTATGGAATCATTCTAAACTCTCTTAAGACCCACAGCCAGGAAGGAAGGCGCAAAG
CTCTGTCCACCTGTAGTTCCCACATCATGGTGGTTGTCTGCTTTTTTGCTCCCTGTATTTTTATATATGC
TAGGCCTGTTTCCAATTTTTCCATTGATAAATATATTGCTGTGTTTTATACGGTTGTTAGTCCTATGCTT
AATCCATTGATATATACCTTGAGAAATTCAGAGATGAAAAATTCTATAAAAAAGCTCTGGTGTAAAACAC
TAGCATAG

Translation (305 aa):
MGQSYNVTEFIFVDLTQDPAGKKALFVLFSLTYIVTMLGNLLIAVTVIASPSLNSPMYFFLACLSVLDAF
YCNTISPNLIIGLLKDKNNISFRACMLQLFVEHLFGGVEVFLLVFMAYDRYVAICKPLHYLTIMNQRVCI
LLLLVAGVGGILHSLIQVLTVYKLPFCGPNVIDHFMCDMNPLLGLACTDTYFLGITVIANGGVICVGIFT
FLLVSYGIILNSLKTHSQEGRRKALSTCSSHIMVVVCFFAPCIFIYARPVSNFSIDKYIAVFYTVVSPML
NPLIYTLRNSEMKNSIKKLWCKTLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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