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Report for CCDS13090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13090.1 Public Homo sapiens 20 GPCPD1 24 110 108 CCDS HistoryNCBI Gene:56261Re-query CCDS DB by CCDS ID:13090.1Re-query CCDS DB by GeneID:56261See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379019.7 ENSP00000368305.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379019.7Link to Ensembl Protein Viewer:ENSP00000368305.4Re-query CCDS DB by Nucleotide ID:ENST00000379019Re-query CCDS DB by Protein ID:ENSP00000368305
Original member Current member NCBI NM_019593.5 NP_062539.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019593.5Link to Protein Sequence:NP_062539.1Re-query CCDS DB by Nucleotide ID:NM_019593Re-query CCDS DB by Protein ID:NP_062539Link to BLAST:NP_062539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062539.1 672 Q9NPB8 672 100% 0 0

Chromosomal Locations for CCDS 13090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 5547661 5547850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5557945 5558105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5558684 5558819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5559940 5560076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5561465 5561530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5565017 5565078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5566733 5566772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5567483 5567560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5570147 5570239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5573915 5573969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5575413 5575545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5575816 5575978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5578380 5578611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5580008 5580131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5584281 5584322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5586194 5586269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5593327 5593411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5598725 5598821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5604364 5604412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGACACCTTCTCAGGTTGCCTTTGAAATAAGAGGAACTCTTTTACCAGGAGAAGTTTTTGCGATATGTG
GAAGCTGTGATGCTTTGGGAAACTGGAATCCTCAAAATGCTGTGGCTCTTCTTCCAGAGAATGACACAGG
TGAAAGCATGCTATGGAAAGCAACCATTGTACTCAGTAGAGGAGTATCAGTTCAGTATCGCTACTTCAAA
GGGTACTTTTTAGAACCAAAGACTATCGGTGGTCCATGTCAAGTGATAGTTCACAAGTGGGAGACTCATC
TACAACCACGATCAATAACCCCTTTAGAAAGCGAAATTATTATTGACGATGGACAATTTGGAATCCACAA
TGGTGTTGAAACTCTGGATTCTGGATGGCTGACATGTCAGACTGAAATAAGATTACGTTTGCATTATTCT
GAAAAACCTCCTGTGTCAATAACCAAGAAAAAATTAAAAAAATCTAGATTTAGGGTGAAGCTGACACTAG
AAGGCCTGGAGGAAGATGACGATGATAGGGTATCTCCCACTGTACTCCACAAAATGTCCAATAGCTTGGA
GATATCCTTAATAAGCGACAATGAGTTCAAGTGCAGGCATTCACAGCCGGAGTGTGGTTATGGCTTGCAG
CCTGATCGTTGGACAGAGTACAGCATACAGACGATGGAACCAGATAACCTGGAACTAATCTTTGATTTTT
TCGAAGAAGATCTCAGTGAGCACGTAGTTCAGGGTGATGCCCTTCCTGGACATGTGGGTACAGCTTGTCT
CTTATCATCCACCATTGCTGAGAGTGGAAAGAGTGCTGGAATTCTTACTCTTCCCATCATGAGCAGAAAT
TCCCGGAAAACAATAGGCAAAGTGAGAGTTGACTATATAATTATTAAGCCATTACCAGGATACAGTTGTG
ACATGAAATCTTCATTTTCCAAGTATTGGAAGCCAAGAATACCATTGGATGTTGGCCATCGAGGTGCAGG
AAACTCTACAACAACTGCCCAGCTGGCTAAAGTTCAAGAAAATACTATTGCTTCTTTAAGAAATGCTGCT
AGTCATGGTGCAGCCTTTGTAGAATTTGACGTACACCTTTCAAAGGACTTTGTGCCCGTGGTATATCATG
ATCTTACCTGTTGTTTGACTATGAAAAAGAAATTTGATGCTGATCCAGTTGAATTATTTGAAATTCCAGT
AAAAGAATTAACATTTGACCAACTCCAGTTGTTAAAGCTCACTCATGTGACTGCACTGAAATCTAAGGAT
CGGAAAGAATCTGTGGTTCAGGAGGAAAATTCCTTTTCAGAAAATCAGCCATTTCCTTCTCTTAAGATGG
TTTTAGAGTCTTTGCCAGAAGATGTAGGGTTTAACATTGAAATAAAATGGATCTGCCAGCAAAGGGATGG
AATGTGGGATGGTAACTTATCAACATATTTTGACATGAATCTGTTTTTGGATATAATTTTAAAAACTGTT
TTAGAAAATTCTGGGAAGAGGAGAATAGTGTTTTCTTCATTTGATGCAGATATTTGCACAATGGTTCGGC
AAAAGCAGAACAAATATCCGATACTATTTTTAACTCAAGGAAAATCTGAGATTTATCCTGAACTCATGGA
CCTCAGATCTCGGACAACCCCCATTGCAATGAGCTTTGCACAGTTTGAAAATCTACTGGGGATAAATGTA
CATACTGAAGACTTGCTCAGAAACCCATCCTATATTCAAGAGGCAAAAGCTAAGGGACTAGTCATATTCT
GCTGGGGTGATGATACCAATGATCCTGAAAACAGAAGGAAATTGAAGGAACTTGGAGTTAATGGTCTAAT
TTATGATAGGATATATGATTGGATGCCTGAACAACCAAATATATTCCAAGTGGAGCAATTGGAACGCCTG
AAGCAGGAATTGCCAGAGCTTAAGAGCTGTTTGTGTCCCACTGTTAGCCGCTTTGTTCCCTCATCTTTGT
GTGGGGAGTCTGATATCCATGTGGATGCCAACGGCATTGATAACGTGGAGAATGCTTAG

Translation (672 aa):
MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK
GYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVETLDSGWLTCQTEIRLRLHYS
EKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLHKMSNSLEISLISDNEFKCRHSQPECGYGLQ
PDRWTEYSIQTMEPDNLELIFDFFEEDLSEHVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRN
SRKTIGKVRVDYIIIKPLPGYSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAA
SHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTV
LENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRSRTTPIAMSFAQFENLLGINV
HTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKELGVNGLIYDRIYDWMPEQPNIFQVEQLERL
KQELPELKSCLCPTVSRFVPSSLCGESDIHVDANGIDNVENA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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