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Report for CCDS25013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25013.1 Public Mus musculus 11 Or1e26 23 108 98 CCDS HistoryNCBI Gene:259025Re-query CCDS DB by CCDS ID:25013.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071553.1 ENSMUSP00000071484.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071553.1Link to Ensembl Protein Viewer:ENSMUSP00000071484.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071553Re-query CCDS DB by Protein ID:ENSMUSP00000071484
Original member Current member EBI ENSMUST00000215689.1 ENSMUSP00000149293.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215689.1Link to Ensembl Protein Viewer:ENSMUSP00000149293.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215689Re-query CCDS DB by Protein ID:ENSMUSP00000149293
Original member Current member NCBI NM_147023.1 NP_667234.1 Accepted alive Link to Nucleotide Sequence:NM_147023.1Link to Protein Sequence:NP_667234.1Re-query CCDS DB by Nucleotide ID:NM_147023Re-query CCDS DB by Protein ID:NP_667234Link to BLAST:NP_667234.1

Chromosomal Locations for CCDS 25013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73588798 73589736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATAAAGAACAACCAAACTGTCATCTCCCAGTTTCTTCTCCTGGGCCTGCCCATCCCCCCAGAGCACC
AGCACCTGTTCTATGCCCTGTTCCTGGCCATGTACCTCACCACCGTCCTGGGGAACCTCATCATCATCAT
CCTCATAATACTGGACTTCCATCTCCACACACCCATATACTTGTTTCTCAGCAACTTGTCATTCTCTGAT
CTCTGTTTTTCCTCTGTCACAATGCCCAAGTTGCTGCAGAACATGCAAAGCCAGGACACAACCATCTCCT
ATGTAGGTTGTCTGACACAAATGTACTTTCCAAATGTTTTTGCAAACCTAGAGAACTTTCTTCTTATGTT
CATGGCCTATGACCGCTATGTGGCCATATGTTACCCTCTTCGTTATACCAGCATCATGAGTCCCATTCTC
TGTGTTTGTATGGTGTTTATGTCCTGGTTACTTACCATGCTGAATTCCACATTGCACACTGTACTTATTG
TTAAATTATCATTCTGTGAGGACAATGTGATCCCCCACTTTTTCTGTGACATATCTGCCGTTCTCAAGTT
GGCCTGCTCTGACATTTATATTAATGAGCTAACGATATTTATCACGGGAGCATTCATTATTGTCATCCCA
TTCTTACTCATTGTTGTGTCCTATGTACAAATTGTCTGCTCCATTCTAAAGTTTTCATCTACACGGGGAA
TAGCCAAGATCTTTTCCACCTGTGGCTCCCACCTGTCTGTGGTCTCACTGTTCTATGGGACAATTATTGG
TCTCTACTTATGCCCATCAACTAATAACTCTACTGTGAAGGACACTGCCATGGCTATGATGTACACAGTG
GTGACTCCCATGCTGAATCCCTTCATCTACAGCCTGAGGAACAAAGATATGAAAGAGGCCCTGATTAGAG
TCCTTTGCAAGAAGGAAATATCTTTATAA

Translation (312 aa):
MIKNNQTVISQFLLLGLPIPPEHQHLFYALFLAMYLTTVLGNLIIIILIILDFHLHTPIYLFLSNLSFSD
LCFSSVTMPKLLQNMQSQDTTISYVGCLTQMYFPNVFANLENFLLMFMAYDRYVAICYPLRYTSIMSPIL
CVCMVFMSWLLTMLNSTLHTVLIVKLSFCEDNVIPHFFCDISAVLKLACSDIYINELTIFITGAFIIVIP
FLLIVVSYVQIVCSILKFSSTRGIAKIFSTCGSHLSVVSLFYGTIIGLYLCPSTNNSTVKDTAMAMMYTV
VTPMLNPFIYSLRNKDMKEALIRVLCKKEISL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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