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Report for CCDS49080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49080.1 Public Mus musculus 12 Tomm20l 23 108 98 CCDS HistoryNCBI Gene:75266Re-query CCDS DB by CCDS ID:49080.1Re-query CCDS DB by GeneID:75266See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021482.5 ENSMUSP00000021482.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021482.5Link to Ensembl Protein Viewer:ENSMUSP00000021482.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021482Re-query CCDS DB by Protein ID:ENSMUSP00000021482
Original member Current member NCBI NM_029227.1 NP_083503.1 Accepted alive Link to Nucleotide Sequence:NM_029227.1Link to Protein Sequence:NP_083503.1Re-query CCDS DB by Nucleotide ID:NM_029227Re-query CCDS DB by Protein ID:NP_083503Link to BLAST:NP_083503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083503.1 152 Q9D4V6 152 100% 0 0

Chromosomal Locations for CCDS 49080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71111445 71111580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71111706 71111749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71117526 71117607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71121864 71122006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71123049 71123102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGCCCAGCGTCCGTCTTGGCGTCGGTCTCCTGGCGGGCTTGGCAGCGGGCGGCGCGGTCGTCCTACTCA
GCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAG
AAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGGAAGAACTA
CAAGAATATTTTTTTCGAGAGGTGCAGATGGGAAAACTTTGTTTAATTAGAGGGGAGCGCGGAATGGGCT
TTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCTGATGTTTTTCAAAAAAAC
ACTCCCTCCTGAGGTTTTTCAGATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACA
TGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGA

Translation (152 aa):
MPSVRLGVGLLAGLAAGGAVVLLSYCVYLDWRRHRDPAFRRRLQDKRRAGQPKAQAPARQLWDPVKKEEL
QEYFFREVQMGKLCLIRGERGMGFEHLTNALLVCEQPKELLMFFKKTLPPEVFQMLLDKIPLICQQLEET
CRSTEHLKDDPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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