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Report for CCDS26371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26371.1 Public Mus musculus 13 Slc17a3 23 108 98 CCDS HistoryNCBI Gene:105355Re-query CCDS DB by CCDS ID:26371.1Re-query CCDS DB by GeneID:105355See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039721.13 ENSMUSP00000039062.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039721.13Link to Ensembl Protein Viewer:ENSMUSP00000039062.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039721Re-query CCDS DB by Protein ID:ENSMUSP00000039062
Original member Current member EBI ENSMUST00000166467.8 ENSMUSP00000131308.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166467.8Link to Ensembl Protein Viewer:ENSMUSP00000131308.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166467Re-query CCDS DB by Protein ID:ENSMUSP00000131308
Original member Current member NCBI NM_134069.3 NP_598830.2 Accepted alive Link to Nucleotide Sequence:NM_134069.3Link to Protein Sequence:NP_598830.2Re-query CCDS DB by Nucleotide ID:NM_134069Re-query CCDS DB by Protein ID:NP_598830Link to BLAST:NP_598830.2

Chromosomal Locations for CCDS 26371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23842450 23842540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23845337 23845548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23846211 23846444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23846878 23846965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23852348 23852434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23855573 23855691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23855812 23855973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23856454 23856583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23856682 23856829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23857101 23857191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23857979 23858113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGCCACAGTGGTAGAGATGAGCCCTACAAGTGAGCAGAGTGAGTTCGTCCTAGGTACGCCAGTGAACA
AGAAGACCCCTGCCCTGAAAGTCCCGAGTTTATGTTCCATGCGCTATGGAATCGCCTTCGTCACACATTT
CTGCAATTTCACACTGATGGCGCAGAATTCTATTATAAGCATCACCATGGTAGCAATGGTCAACAACACC
GACCACCCACCCCACCTCAATAGCTCTACTGAACAGCTTCCTGCGGGTTTAAGCGGTGATCAGCATGAAG
CCTCAAAGCATCTTCCTATAAAGGCCCCTGTGTATAACTGGAGTCCTCAAACTCAAGGAATCATCTTCAG
CTCTGTCCAGTATGGCATGATACTGATGCAAGGTCCTGGAGGATACTTGGCAGGGAAAATAGGAACAAAG
AAAGTGGTTGGAATTGCTCTGCTTGGATCTTCATTACTCACTCTCTGCATCCCACTGGCTGCCAATCTTG
GACTAGTTTTTTTCCTGGCAACTCGAGCAGTTCAAGGCTTAATGCAGGGCACTGGATATGGGGGACAGTT
TGCACTCTGGCAGAAATGGGCTCCTCCGAATGAGCGCAGCCGACTCTGCACCATTGCCTTGTCAGGAATG
ACATTGGGAATCTTTACTGTCCTCCTTGTGGGCGGCATCATTAGTGAAGCCCTTGGGTGGCCCTTTGTCT
TCTATAGTTTTGGAGGTGGTGGTGTGCTCTGCAGCCTTCTCTGGTTCATTCTGATTTATGATGACCCTGT
CTCTCACCCATGGATAAGTGGCCCAGAAAGAGAATATATTTTATCCTCTCTGAACCAACAGTTCAGCTCA
GAAGAGCAGCCACTTCCCATCAAAGCTATGCTCAAATCTCTGCCTCTCTGGTCCATGTGTCTCTGCACTA
TGACCCATCAGTGGCTTGTTAACACCTTTATAATGTACACTCCAACCTACATCAGTTCTGTATTCAAAGT
TAACATCAGAGACAATGGGTTCCTGTCTTCTCTTCCCTTTATTGTTGCCTGGGTCCTTGGTATCCTGGGA
GGCTGGCTGGCAGATTTTCTACTGAGCAAGAATTTTAGGCTCATAACTGTGAGAAAATTCATCACACTTT
TAGGAAATGCTCCTCCTGCAGCCCTCGTTGCGGCTCTGCCCTATATCCAATCCAGCTATATTACAACAAT
TATATTTCTGACAATTTCCTGTGGACTGTGCCCTCTATCTCAGGCAGGAATCTATATTAATGCGTTAGAC
ATTGCTCCAAGGTATGCCAGCTTTCTCATGGGAACATCAAGAGGATTGGCACATTCATCGGCTGTGCTGG
TACCCATTGTTGCTGGCTTTTTCCTCAGCCAGGACTCTGAATTCGGGTGGAGGAATTTCTTTTTTGTAGT
GTTTGCAGTTAACCTACTTGGCTTAATCATCTACCTCGTGTTTGGGAAAGCAGATGTTCAAGAATGGGCT
AGAGAGAGGAAGCTCACTCGTTTGTGA

Translation (498 aa):
MATVVEMSPTSEQSEFVLGTPVNKKTPALKVPSLCSMRYGIAFVTHFCNFTLMAQNSIISITMVAMVNNT
DHPPHLNSSTEQLPAGLSGDQHEASKHLPIKAPVYNWSPQTQGIIFSSVQYGMILMQGPGGYLAGKIGTK
KVVGIALLGSSLLTLCIPLAANLGLVFFLATRAVQGLMQGTGYGGQFALWQKWAPPNERSRLCTIALSGM
TLGIFTVLLVGGIISEALGWPFVFYSFGGGGVLCSLLWFILIYDDPVSHPWISGPEREYILSSLNQQFSS
EEQPLPIKAMLKSLPLWSMCLCTMTHQWLVNTFIMYTPTYISSVFKVNIRDNGFLSSLPFIVAWVLGILG
GWLADFLLSKNFRLITVRKFITLLGNAPPAALVAALPYIQSSYITTIIFLTISCGLCPLSQAGIYINALD
IAPRYASFLMGTSRGLAHSSAVLVPIVAGFFLSQDSEFGWRNFFFVVFAVNLLGLIIYLVFGKADVQEWA
RERKLTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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