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Report for CCDS51022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51022.1 Public Mus musculus 3 Slc22a15 23 108 98 CCDS HistoryNCBI Gene:242126Re-query CCDS DB by CCDS ID:51022.1Re-query CCDS DB by GeneID:242126See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106928.9 ENSMUSP00000102541.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106928.9Link to Ensembl Protein Viewer:ENSMUSP00000102541.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106928Re-query CCDS DB by Protein ID:ENSMUSP00000102541
Original member Current member NCBI NM_001039371.2 NP_001034460.2 Accepted alive Link to Nucleotide Sequence:NM_001039371.2Link to Protein Sequence:NP_001034460.2Re-query CCDS DB by Nucleotide ID:NM_001039371Re-query CCDS DB by Protein ID:NP_001034460Link to BLAST:NP_001034460.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034460.2 544 Q504N2-1 544 100% 0 0

Chromosomal Locations for CCDS 51022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 101860439 101860519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101860801 101860989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101862905 101862977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101864490 101864610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101875647 101875732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101877870 101878010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101880009 101880224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101883460 101883589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101897110 101897274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101897937 101898069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101915305 101915517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101924032 101924118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGAGGTGGAGGAGGCGTTCCAGGCGGTGGGCGAGATGGGCCTCTATCAGATGTACTTGTGCTTCCTGC
TGGCTGTGCTGCTGCAGCTTTATGTGGCCACAGAAGCCATCCTCATTGCACTGATTGGAGCTACACCAGC
ATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAG
GCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTT
TCACCTCTATTGCCTCTGAGTGGTTTTTAATTGCCAACCGATCTTACAAAGTCAGCGCGGCCAGCTCCTC
TTTCTTCAGTGGTGTGTTTGTTGGTGTTATCTCCTTTGGTCAGCTTTCAGATCGATTTGGAAGGAGAAAA
GTCTATCTCACAGGTTTTGCTCTTGACATCTTATTTGCTGTCGCAAATGGATTTTCCCCCTCATATGAAT
TCTTTGCAGTAACTCGCTTCTTGGTGGGCATGATGAATGGAGGGATGTCCCTGGTGGCCTTTGTCTTGCT
AAATGAGTGCGTGGGCACCGCCTACTGGGCACTTGCAGGATCGATTGGTGGTCTCTTCTTCGCTGTTGGC
ATCGCGCAGTATGCCCTATTAGGGTACTTCATCCGCTCCTGGAGGACCCTAGCTGTTCTGGTCAACCTTC
AGGGAACATTGGTCTTTCTCTTATCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCG
GCTGAGTGAGGCGGAAGAGGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCA
CTAACACACCCGGCCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTGGATCTTTTCCGTTACCGGATCC
TCCTAGGACATACCCTGATCCTGATGTTCATCTGGTTTGTGTGCAGCTTGGTGTACTACGGCCTCACCCT
GAGTGCAGGTGACCTAGGGGGCAGCATTTATGCCAACCTGGCTCTATCTGGCCTCATAGAGATTCCATCC
TACCCTCTCTGCATCTACCTGATTAACCAAAGATGGTTTGGTCGGAAGCGGACACTAGCAGCGTTTCTGT
GCCTTGGAGGACTGGCCTGTCTTATTGTGATGTTTCTTCCGGAAAAGAAAGACACAGGCGTGTTTGCAGT
GGTCAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCATCAGTGCTGCCTTTAACATTGTTTACATC
TACACCTCTGAGCTGTACCCCACTGTCATCAGAAACGTTGGCCTGGGAGCGTGCTCCATGTTCTCCCGAG
TCGGTGGGATCATTGCCCCCTTCGTCCCCTCCCTGAAGGAAGTACAGTGGTCTCTGCCCTTCATCGTGTT
TGGAGCCACAGGCCTGACCTCAGGCCTCCTGAGCCTGCTATTGCCAGAGACTCTGAACAGCCCTTTGCTG
GAGACATTTTCTGATCTTCAAATGTACTCATATAGGAGGTTAGGAGAGGAAGCGCTATCTCTACAGACCT
TGGATCCTCCACAGCCCCTGGACAAGGTCAGCAGTGAGAGTGAGGAGGAGGAAGAGTTCTATGATGCAGA
TGAGGAGACCCAGATGATCAAGTGA

Translation (544 aa):
MEVEEAFQAVGEMGLYQMYLCFLLAVLLQLYVATEAILIALIGATPAYHWDMADLLPNQSHSNQTLGKGQ
AFGDWLLTANGSEIHKHVHFSNSFTSIASEWFLIANRSYKVSAASSSFFSGVFVGVISFGQLSDRFGRRK
VYLTGFALDILFAVANGFSPSYEFFAVTRFLVGMMNGGMSLVAFVLLNECVGTAYWALAGSIGGLFFAVG
IAQYALLGYFIRSWRTLAVLVNLQGTLVFLLSLFIPESPRWLYSQGRLSEAEEALYFIAKRNRKLKCTFS
LTHPANRSYRATGSFLDLFRYRILLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPS
YPLCIYLINQRWFGRKRTLAAFLCLGGLACLIVMFLPEKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYI
YTSELYPTVIRNVGLGACSMFSRVGGIIAPFVPSLKEVQWSLPFIVFGATGLTSGLLSLLLPETLNSPLL
ETFSDLQMYSYRRLGEEALSLQTLDPPQPLDKVSSESEEEEEFYDADEETQMIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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