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Report for CCDS17409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17409.1 Public Mus musculus 3 Otol1 23 108 98 CCDS HistoryNCBI Gene:229389Re-query CCDS DB by CCDS ID:17409.1Re-query CCDS DB by GeneID:229389See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053013.5 ENSMUSP00000057607.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053013.5Link to Ensembl Protein Viewer:ENSMUSP00000057607.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053013Re-query CCDS DB by Protein ID:ENSMUSP00000057607
Original member Current member NCBI NM_001018031.2 NP_001018041.2 Accepted alive Link to Nucleotide Sequence:NM_001018031.2Link to Protein Sequence:NP_001018041.2Re-query CCDS DB by Nucleotide ID:NM_001018031Re-query CCDS DB by Protein ID:NP_001018041Link to BLAST:NP_001018041.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018041.2 482 Q4ZJM7 482 100% 0 0

Chromosomal Locations for CCDS 17409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 70018494 70018881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70023217 70023306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70026575 70026646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70027227 70028125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGTGGATATTTTCTTCGCTTTGTGCTGTTTTAACTATTTTGGCTATGGATGATGTGGCCACAGAAGCAA
AGACCACACCATACACCAAATTTACGAAGAAATCTGAAGGAAAAGAGATGTTGAAGGGCTTAAAGCCGTC
CAGTGGCTTCTTTCTGGATGGAGAAGAAACCGTCCATACGGAAACGGCTGCCATGGCAGAGCCCACCACC
GGCTCCCCTGCCTTGGCAATGGCTGAGTCCACCGCAGGCCCCTCGGCCTCTGCCACAACCCGTCTCCTTC
CCTTCGAGAGCTTCTCTCTGGACACAACTGGTTTCGTTTTGAATTGCTGCCATTGTTGTTCATTTGTCAC
TGGGCAGAAAGGAGAACCCGGAAAGATGGGAAAACAAGGCCCTAAAGGAGAGACTGGTGACACTGGCAGC
CCAGGACACCCAGGAACCACTGGACCTCAAGGTCCCAAAGGCCAGAAAGGAGAGAAAGGACTAAAGGGAG
ACCGGGGGGACCAAGGAGCAGGTGGCATTCCGGGGTACCCAGGAAAACCAGGAGAGCAAGGTGCACTTGG
TCCCAAGGGAGATAAAGGAACCATCGGCCCGGCAGGAACGAAAGGACAAAAAGGCTCTAAGGGAGAACTG
TGTGGGAATGGCACTAAAGGAGAGAAAGGGGACCCTGGGGCCTCTGGGGCCCATGGCTTCATTGGAGAGC
CTGGGGCCAAGGGCGAGAAGGGTGGTGTTGGGGAGAAAGGCTACCGAGGAGATTTGGGGGAAAGGGGAGA
AAAGGGGCAGAAAGGCGAGAAAGGGATGGAGGGAGAGAAAGGTAGCAGAGGAGATGTTGGGTCAGAAGGC
AAAAGGGGTTCAGATGGTCTACCAGGGCTCAGAGGCGATTCTGGTCCTAAAGGAGAAAAAGGAGAGATAG
GTTCTCCTGGTTTCACCGGACCTGCGGGACCAAAGGGTGAGCTTGGAAGCAAAGGTGTTCGAGGGCCAAC
AGGGAAGAAGGGCTCTCGGGGTGTCAAGGGTTCCAAAGGCGAGGCCACACAAGTCCCACAGTCGGCTTTC
AGTGCCCTTTTATCCAAGCCCTTCCCTCCCCCCAACGTTCCCATCAAGTTTGACAAGATTCTCTCTAATG
ACCAAGGGGATTACAGCCCCGTCACTGGGAAATTTAACTGTAGTGTTCCTGGGACATACATATTTTCCTA
TCATGTCACTGTCAGGGGTCGACCTGCTCGGATCAGCCTCGTGGCCCGCAACAGGAAGCAGTTCAAATCC
AGAGAGACGCTCTATGGTCAGCAAGTAGATCAGGCCTCCCTCCTCCTCATTCTGAAATTGAGTGCAGGAG
ATCAAGTGTGGCTGGAAGTGTCAAAGGACTGGAATGGGCTGTATGTCGGCCCCGAGGATGACAGCATCTT
TAGTGGGTTCCTTCTGTACCCAGAGGAAACTTTTAGTAAGTCACCATAA

Translation (482 aa):
MWIFSSLCAVLTILAMDDVATEAKTTPYTKFTKKSEGKEMLKGLKPSSGFFLDGEETVHTETAAMAEPTT
GSPALAMAESTAGPSASATTRLLPFESFSLDTTGFVLNCCHCCSFVTGQKGEPGKMGKQGPKGETGDTGS
PGHPGTTGPQGPKGQKGEKGLKGDRGDQGAGGIPGYPGKPGEQGALGPKGDKGTIGPAGTKGQKGSKGEL
CGNGTKGEKGDPGASGAHGFIGEPGAKGEKGGVGEKGYRGDLGERGEKGQKGEKGMEGEKGSRGDVGSEG
KRGSDGLPGLRGDSGPKGEKGEIGSPGFTGPAGPKGELGSKGVRGPTGKKGSRGVKGSKGEATQVPQSAF
SALLSKPFPPPNVPIKFDKILSNDQGDYSPVTGKFNCSVPGTYIFSYHVTVRGRPARISLVARNRKQFKS
RETLYGQQVDQASLLLILKLSAGDQVWLEVSKDWNGLYVGPEDDSIFSGFLLYPEETFSKSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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