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Report for CCDS52561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52561.1 Public Mus musculus 8 Marchf1 23 108 98 CCDS HistoryNCBI Gene:72925Re-query CCDS DB by CCDS ID:52561.1Re-query CCDS DB by GeneID:72925See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039540.11 ENSMUSP00000044070.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039540.11Link to Ensembl Protein Viewer:ENSMUSP00000044070.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039540Re-query CCDS DB by Protein ID:ENSMUSP00000044070
Original member Current member NCBI NM_001166375.1 NP_001159847.1 Accepted alive Link to Nucleotide Sequence:NM_001166375.1Link to Protein Sequence:NP_001159847.1Re-query CCDS DB by Nucleotide ID:NM_001166375Re-query CCDS DB by Protein ID:NP_001159847Link to BLAST:NP_001159847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159847.1 275 Q6NZQ8-4 275 100% 0 0

Chromosomal Locations for CCDS 52561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66386308 66386519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66418816 66418996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66456053 66456188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66468232 66468530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAACCTCACTATGAGCAACATGACCAGCAGCCACATTTGCTGTAATTTTTTAAATATGTGGAAAAAAA
GCAAGATATCAACCATGTATTACCTTAATCAAGATGCCAAATTATCTAACTTGTTTCTCCAGGCAAGCAG
CCCAACGACAGGGACAGCTCCCAGGAGCCAGTCAAGGTTGTCTGTCTGTCCATCTACTCAGGACATCTGC
AGGATCTGTCACTGCGAAGGAGATGAAGAGAGCCCACTCATCACACCCTGTCGCTGCACAGGAACCTTGC
GCTTTGTCCACCAGTCCTGCCTCCACCAATGGATCAAGAGCTCAGACACACGATGCTGTGAGCTCTGCAA
GTATGACTTCATAATGGAGACCAAGCTCAAGCCCCTTCGGAAGTGGGAAAAGCTCCAGATGACCACGAGC
GAAAGGAGGAAAATATTCTGCTCTGTCACGTTCCACGTCATCGCCGTCACCTGTGTGGTGTGGTCCTTGT
ATGTGTTGATAGATCGGACAGCGGAGGAAATCAAGCAAGGTGTGCTGGAATGGCCATTTTGGACAAAACT
GGTTGTGGTGGCTATTGGCTTCACGGGAGGTCTCGTCTTCATGTATGTACAGTGTAAAGTCTACGTCCAA
CTGTGGCGCCGGCTGAAGGCCTACAACCGTGTGATCTTTGTGCAGAATTGCCCAGACACTGCCAACAAAC
TGGAGAAGAACTTCCCGTGTAATGTGAACACGGAAATCAAGGATGCTGTGGTTGTGCCTGTGCCACAGAC
AGGTTCAAATACACTGCCAACTGCAGAGGGAGCCCCACCTGAGGTTATACCAGTCTGA

Translation (275 aa):
MNLTMSNMTSSHICCNFLNMWKKSKISTMYYLNQDAKLSNLFLQASSPTTGTAPRSQSRLSVCPSTQDIC
RICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKPLRKWEKLQMTTS
ERRKIFCSVTFHVIAVTCVVWSLYVLIDRTAEEIKQGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQ
LWRRLKAYNRVIFVQNCPDTANKLEKNFPCNVNTEIKDAVVVPVPQTGSNTLPTAEGAPPEVIPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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