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Report for CCDS30401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30401.1 Public Mus musculus X Armcx2 23 108 98 CCDS HistoryNCBI Gene:67416Re-query CCDS DB by CCDS ID:30401.1Re-query CCDS DB by GeneID:67416See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035559.10 ENSMUSP00000049147.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035559.10Link to Ensembl Protein Viewer:ENSMUSP00000049147.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035559Re-query CCDS DB by Protein ID:ENSMUSP00000049147
Original member Current member EBI ENSMUST00000113193.8 ENSMUSP00000108818.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113193.8Link to Ensembl Protein Viewer:ENSMUSP00000108818.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113193Re-query CCDS DB by Protein ID:ENSMUSP00000108818
Original member Current member EBI ENSMUST00000119010.7 ENSMUSP00000112507.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119010.7Link to Ensembl Protein Viewer:ENSMUSP00000112507.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119010Re-query CCDS DB by Protein ID:ENSMUSP00000112507
Original member Current member EBI ENSMUST00000168264.1 ENSMUSP00000127305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168264.1Link to Ensembl Protein Viewer:ENSMUSP00000127305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168264Re-query CCDS DB by Protein ID:ENSMUSP00000127305
Original member Current member NCBI NM_001166397.1 NP_001159869.1 Accepted alive Link to Nucleotide Sequence:NM_001166397.1Link to Protein Sequence:NP_001159869.1Re-query CCDS DB by Nucleotide ID:NM_001166397Re-query CCDS DB by Protein ID:NP_001159869Link to BLAST:NP_001159869.1
Original member Current member NCBI NM_001166398.1 NP_001159870.1 Accepted alive Link to Nucleotide Sequence:NM_001166398.1Link to Protein Sequence:NP_001159870.1Re-query CCDS DB by Nucleotide ID:NM_001166398Re-query CCDS DB by Protein ID:NP_001159870Link to BLAST:NP_001159870.1
Original member Current member NCBI NM_026139.4 NP_080415.3 Accepted alive Link to Nucleotide Sequence:NM_026139.4Link to Protein Sequence:NP_080415.3Re-query CCDS DB by Nucleotide ID:NM_026139Re-query CCDS DB by Protein ID:NP_080415Link to BLAST:NP_080415.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159869.1 784 Q6A058 784 100% 0 0
NP_001159870.1 784 Q6A058 784 100% 0 0
NP_080415.3 784 Q6A058 784 100% 0 0

Chromosomal Locations for CCDS 30401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134804528 134806882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGAGCCGAGCTCGGGATGCTGGCTGTGTAGCTGCTGGAATAGTGATTGGGGCGAGTGCCTGGTACTGTG
TC
TACAAATATACTAGGGGAAAAGACCAGAAGAAGAAGAGGCTGACCAAGCCCAAGAACCGGGCCTCTGT
G
GGTACTGGAAGCAGGGCTAGAGCGGGCCTCAGAGCTGGATTCACAATTGACCTTGGGCCAGGATTCAGT
CCC
CCAAACCCCGTCGATATTGAGATAATGAACAAGGCCCAAGGAGAAGCCTCCAATCTTGCCACCACCG
TA
GCTGAAGAAGTGGCACCAGCTGCACCCAGTCCTAAGGTTCAGAATGGGGCAGAAAGTAAGGTCCAGGA
G
TTAAATGGGGCTAAAACTGAGGCTAATCTGGAATCAGTAGTCATGCCTTCAGCTACCTGTACAGTTACA
CCT
CCTCCCAAGGTGGCAGGGGGTCTCACTGCTGCAGAGGCTCCAGAAATCATAGGAGCTCCCAAAGTGC
TG
GAAGCTCCCAGCACCACAGAGGCTTCTGGGGCAGTAGCAGCCCCTGGACCAACAGTATCTCCAATGAT
A
GCCCAGACTCCTGGGCCAGTGGTACCTTCGCCAACAATAGTGTCTACTGGGCCAGCAGCAATTCCCTGG
GCA
GTGGCACATCCCGGGGCTGTCCAGTCTCCTGGGCCAGCAGTACCTCCCATGGCAGTCCAATCTCTTG
TG
CCAGCAGCACCTTCCTGGGCAGTAGTAGCACCTCCTGGGGCAGTCTACATTCCTGTGGCAGCCCACTT
T
GCTGGGCCAGCAGCAGCTTCCAGGGTAACCCAGTCTCCTGGGACGGTGATACCTCCCCTTCCACCCCCA
TCA
TCAGTACTTCCCAGGGGAGTCCCATCAGTACCTGGCAGAACAGTCCAGTCTCCTGGGGCAGCCGTGC
AT
CCTGTGGCAGCCCAATCTACTGGGGTAGTAGTGCCTCCTAGGGCAGTACAGTATTCTGGGGCAGCAGT
G
ACTTCTGGAGGGGCAGCAGTACCTTCCGGAGGGGCAGCAACTCCTAGGGCAGCAGCATCTACCCAGAGG
ACA
GCAAGCACAGAAGTCATGCAGGTCCCTAGGGTGGCAGCAGCTACTGAAGCCACAGAGACTCCTAGAA
TA
GGAACACCTGCCATGGTAGCTGAGGCTTCTCTGCCCGTGCATTCTGGGGCTGCAGAGAATCCTGGGAC
T
TCAGGGTCCTCTAAGACAGCAGCCACTGGCAAGAAAGCAGCCCCTGGAGCTCACACTGGGGCTATACCT
AAA
GCTGGGTCAGCCACTGGAGCTGTACCCAAAGGTGGAGGAGGCAAGGGTGGAAACAAGAACCGGAGTG
GA
GGCAAGGGCAAAAATAGGAAGAACAAGGTTGATGTGGATGAGTTGGGGATGGGTTTCCGTCCTGGTGA
T
GGGGCTGCAGCTGCGGCGGCGGCTTCTGCTAATGGGGGGCAGGCCTTCCTAGCAGAGATTCCGGAATCT
GAG
GAAGGGGAATCTGGGTGGACTGACACAGAGTCCGATTCTGACTCTGAGCCGGACGTCCCGCAGAGAG
GG
AAGGGGAAGAGAACCATTCCCATGCATAAGCGCCCCTTTCCATATGAAATTGATGAGATCCTAGGTGT
T
CGAGATCTCAGGAAAGTCCTAGCCTTGCTTCAGAAGTCAGATGATCCCTTCATTCAGCAAGTAGCCCTG
CTC
ACCCTGAGCAACAATGCCAATTATTCATGTAATCAAGAAACAATCCGAAAGTTGGGAGGCCTCCCAA
TT
ATTGCAAACATGATCAACAAAACTGACCCCCACATTAAGGAAAAAGCCTTAATGGCCATGAATAACCT
G
AGTGAAAATTATGAAAACCAGGGCAGACTTCAGGTGTACATGAATAAAGTGATGGATGATATTATGGCT
TCT
AACCTGAACTCAGCGGTACAGGTAGTTGGGCTAAAATTTTTAACAAACATGACTATTACTAATGACT
AC
CAGCACCTGCTTGTCAATTCCATTGCCAACTTTTTCCGCTTGTTATCTCAGGGGGGTGGAAAAATCAA
G
GTTGAGATTCTGAAAATACTTTCAAACTTTGCTGAAAATCCGGACATGCTAAAGAAACTTCTCGGTACC
CAG
GTGCCGTCATCATTTAGTTCCCTTTATAATTCTTATGTGGAATCAGAAATTCTTATTAATGCCCTTA
CT
CTATTTGAGATTATCTTCGACAACCTCAGAGCAGAAGTGTTCAACTACAGGGAATTCAACAAGGGGTC
C
CTGTTTTACTTATGCACTACATCTGGGGTGTGTGTGAAGAAAATTCGAGCCTTAGCAAATCACCACGAC
CTC
TTGGTGAAAGTGAAAGTTATAAAGCTGGTAAACAAATTCTGA


Translation (784 aa):
MSRARDAGCVAAGIVIGASAWYCVYKYTRGKDQKKKRLTKPKNRASVGTGSRARAGLRAGFTIDLGPGFS
P
PNPVDIEIMNKAQGEASNLATTVAEEVAPAAPSPKVQNGAESKVQELNGAKTEANLESVVMPSATCTVT
P
PPKVAGGLTAAEAPEIIGAPKVLEAPSTTEASGAVAAPGPTVSPMIAQTPGPVVPSPTIVSTGPAAIPW
A
VAHPGAVQSPGPAVPPMAVQSLVPAAPSWAVVAPPGAVYIPVAAHFAGPAAASRVTQSPGTVIPPLPPP
S
SVLPRGVPSVPGRTVQSPGAAVHPVAAQSTGVVVPPRAVQYSGAAVTSGGAAVPSGGAATPRAAASTQR
T
ASTEVMQVPRVAAATEATETPRIGTPAMVAEASLPVHSGAAENPGTSGSSKTAATGKKAAPGAHTGAIP
K
AGSATGAVPKGGGGKGGNKNRSGGKGKNRKNKVDVDELGMGFRPGDGAAAAAAASANGGQAFLAEIPES
E
EGESGWTDTESDSDSEPDVPQRGKGKRTIPMHKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQVAL
L
TLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMA
S
NLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLGT
Q
VPSSFSSLYNSYVESEILINALTLFEIIFDNLRAEVFNYREFNKGSLFYLCTTSGVCVKKIRALANHHD
L
LVKVKVIKLVNKF




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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