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Report for CCDS48681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48681.1 Public Mus musculus 10 Alyreffm6 23 108 98 CCDS HistoryNCBI Gene:100043231Re-query CCDS DB by CCDS ID:48681.1Re-query CCDS DB by GeneID:100043231See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218922.1 ENSMUSP00000151319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218922.1Link to Ensembl Protein Viewer:ENSMUSP00000151319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218922Re-query CCDS DB by Protein ID:ENSMUSP00000151319
Original member Current member NCBI NM_001166638.1 NP_001160110.1 Accepted alive Link to Nucleotide Sequence:NM_001166638.1Link to Protein Sequence:NP_001160110.1Re-query CCDS DB by Nucleotide ID:NM_001166638Re-query CCDS DB by Protein ID:NP_001160110Link to BLAST:NP_001160110.1

Chromosomal Locations for CCDS 48681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100345990 100346859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGACTACCATGGCTGACAAAATGGACATGTCATTGGAAGACATCATTAAGCTGAACAAGATGCAGCAAG
GACGTCGTGACAGGCCTGATTCCCGGGTGAAGCGAGGCACTGGGCCTAAGAGGTATCGGCCAGCTTTCAC
CCATGGTGGAAGGAACAGGCTGGCACCATACTGCAGACCAAAACAACTTCCAGACAAGTGGCAGCATGAC
CTATTCATTGGAGGCTTCAGGGGTCAAAACCACGTGGATACTGGTGGGAAGCTGTTCCTGTCAAATCTGC
ACTTCGGAGTGTCAGATGCTGATATTCAGCTACTCTTTGCTGAATTTGGAACGTTGAAAAAATCTGCTGT
GCACTATGATCGCTGTGGACGAAGTTTAGGGACAGCACATGTGCACTTTGAAAGGAAAGCAGATGCCCTG
AAGGCTATGAGAGAGTACAATGGCGCCCCTTTGGATGGCCGCCCTATGAACATCCACCTTGTCACTTCAC
AGATTGATAGACAAGGAAGACCTGCACTAAACAGTGATAAGGGTGGCATGACAAGAAACCCTGGCTCTGG
AGTATTAAGTGGTGGAGGCACCAAGAGATGGACACTTGGAGGCAGCCAGGGAAGCGGGAGAGGCACCAGC
AGGAACTCAAAACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAGCAGAAGCACCAGAAGCAGC
AACAGCAGAAGCAGCAGCAACAGCAGCAGAAGCAGGGACAGAATCACCAGCACCAGCAGCAGCAGAAGGA
GCAGCAGCAGCAACAGCAGCAGAAGGAACTGCAGCAGCTATCTGTAGAGGAGCTGGACGCCCAGCTGGAT
TATTATCAGGATATGATGGACACCAGCTAA

Translation (289 aa):
MTTMADKMDMSLEDIIKLNKMQQGRRDRPDSRVKRGTGPKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHD
LFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAHVHFERKADAL
KAMREYNGAPLDGRPMNIHLVTSQIDRQGRPALNSDKGGMTRNPGSGVLSGGGTKRWTLGGSQGSGRGTS
RNSKLQQQQQQQQQQEEQKHQKQQQQKQQQQQQKQGQNHQHQQQQKEQQQQQQQKELQQLSVEELDAQLD
YYQDMMDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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