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Report for CCDS27526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27526.1 Public Mus musculus 15 Psca 23 108 98 CCDS HistoryNCBI Gene:72373Re-query CCDS DB by CCDS ID:27526.1Re-query CCDS DB by GeneID:72373See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023265.4 ENSMUSP00000023265.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023265.4Link to Ensembl Protein Viewer:ENSMUSP00000023265.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023265Re-query CCDS DB by Protein ID:ENSMUSP00000023265
Original member Current member NCBI NM_028216.2 NP_082492.1 Accepted alive Link to Nucleotide Sequence:NM_028216.2Link to Protein Sequence:NP_082492.1Re-query CCDS DB by Nucleotide ID:NM_028216Re-query CCDS DB by Protein ID:NP_082492Link to BLAST:NP_082492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082492.1 123 P57096 123 100% 0 0

Chromosomal Locations for CCDS 27526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74714855 74714906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74716021 74716128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74716386 74716597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGAAGACCGTCTTCTTTCTCCTGCTGGCCACCTACTTAGCCCTGCATCCAGGTGCTGCTCTGCAGTGCT
AT
TCATGCACAGCACAGATGAACAACAGAGACTGTCTGAATGTACAGAACTGCAGCCTGGACCAGCACAG
T
TGCTTTACATCGCGCATCCGGGCCATTGGACTCGTGACAGTTATCAGTAAGGGCTGCAGCTCACAGTGT
GAG
GATGACTCGGAGAACTACTATTTGGGCAAGAAGAACATCACGTGCTGCTACTCTGACCTGTGCAATG
TC
AACGGGGCCCACACCCTGAAGCCACCCACCACCCTGGGGCTGCTGACCGTGCTCTGCAGCCTGTTGCT
G
TGGGGCTCCAGCCGTCTGTAG


Translation (123 aa):
MKTVFFLLLATYLALHPGAALQCYSCTAQMNNRDCLNVQNCSLDQHSCFTSRIRAIGLVTVISKGCSSQC
E
DDSENYYLGKKNITCCYSDLCNVNGAHTLKPPTTLGLLTVLCSLLLWGSSRL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser