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Report for CCDS50044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50044.1 Public Mus musculus 17 Hmga1 23 108 98 CCDS HistoryNCBI Gene:15361Re-query CCDS DB by CCDS ID:50044.1Re-query CCDS DB by GeneID:15361See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114888.10 ENSMUSP00000110538.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114888.10Link to Ensembl Protein Viewer:ENSMUSP00000110538.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114888Re-query CCDS DB by Protein ID:ENSMUSP00000110538
Original member Current member EBI ENSMUST00000118570.1 ENSMUSP00000114101.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118570.1Link to Ensembl Protein Viewer:ENSMUSP00000114101.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118570Re-query CCDS DB by Protein ID:ENSMUSP00000114101
Original member Current member EBI ENSMUST00000231358.1 ENSMUSP00000155876.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231358.1Link to Ensembl Protein Viewer:ENSMUSP00000155876.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231358Re-query CCDS DB by Protein ID:ENSMUSP00000155876
Original member Current member EBI ENSMUST00000232552.1 ENSMUSP00000156044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232552.1Link to Ensembl Protein Viewer:ENSMUSP00000156044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232552Re-query CCDS DB by Protein ID:ENSMUSP00000156044
Original member Current member EBI ENSMUST00000231825.1 ENSMUSP00000156327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231825.1Link to Ensembl Protein Viewer:ENSMUSP00000156327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231825Re-query CCDS DB by Protein ID:ENSMUSP00000156327
Original member Current member NCBI NM_001166537.1 NP_001160009.1 Accepted alive Link to Nucleotide Sequence:NM_001166537.1Link to Protein Sequence:NP_001160009.1Re-query CCDS DB by Nucleotide ID:NM_001166537Re-query CCDS DB by Protein ID:NP_001160009Link to BLAST:NP_001160009.1
Original member Current member NCBI NM_001166539.1 NP_001160011.1 Accepted alive Link to Nucleotide Sequence:NM_001166539.1Link to Protein Sequence:NP_001160011.1Re-query CCDS DB by Nucleotide ID:NM_001166539Re-query CCDS DB by Protein ID:NP_001160011Link to BLAST:NP_001160011.1
Original member Current member NCBI NM_001166540.1 NP_001160012.1 Accepted alive Link to Nucleotide Sequence:NM_001166540.1Link to Protein Sequence:NP_001160012.1Re-query CCDS DB by Nucleotide ID:NM_001166540Re-query CCDS DB by Protein ID:NP_001160012Link to BLAST:NP_001160012.1
Original member Current member NCBI NM_001166541.1 NP_001160013.1 Accepted alive Link to Nucleotide Sequence:NM_001166541.1Link to Protein Sequence:NP_001160013.1Re-query CCDS DB by Nucleotide ID:NM_001166541Re-query CCDS DB by Protein ID:NP_001160013Link to BLAST:NP_001160013.1
Original member Current member NCBI NM_001166542.1 NP_001160014.1 Accepted alive Link to Nucleotide Sequence:NM_001166542.1Link to Protein Sequence:NP_001160014.1Re-query CCDS DB by Nucleotide ID:NM_001166542Re-query CCDS DB by Protein ID:NP_001160014Link to BLAST:NP_001160014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160009.1 96 P17095-1 96 100% 0 0
NP_001160011.1 96 P17095-1 96 100% 0 0
NP_001160012.1 96 P17095-1 96 100% 0 0
NP_001160013.1 96 P17095-1 96 100% 0 0
NP_001160014.1 96 P17095-1 96 100% 0 0

Chromosomal Locations for CCDS 50044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27559569 27559670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27560928 27561011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27561461 27561511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27562438 27562491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGAGCGAGTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAAGCAGGAAAAGGATGGGACTGAGAAGC
GAGGCCGGGGCAGGCCACGCAAGCAGCCTCCGAAAGAGCCCAGTGAAGTGCCAACTCCGAAGAGACCTCG
GGGCCGACCAAAGGGAAGCAAGAATAAGGGCGCCGCCAAGACCCGGAAAGTCACCACAGCTCCAGGGAGG
AAACCAAGGGGCAGACCCAAGAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCCCAGGAGTCCTCTGAGG
AGGAGCAGTGA

Translation (96 aa):
MSESGSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKVTTAPGR
KPRGRPKKLEKEEEEGISQESSEEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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