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Report for CCDS28564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28564.1 Public Mus musculus 17 Hmga1 23 108 98 CCDS HistoryNCBI Gene:15361Re-query CCDS DB by CCDS ID:28564.1Re-query CCDS DB by GeneID:15361See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118599.8 ENSMUSP00000113015.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118599.8Link to Ensembl Protein Viewer:ENSMUSP00000113015.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118599Re-query CCDS DB by Protein ID:ENSMUSP00000113015
Original member Current member EBI ENSMUST00000119486.8 ENSMUSP00000113916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119486.8Link to Ensembl Protein Viewer:ENSMUSP00000113916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119486Re-query CCDS DB by Protein ID:ENSMUSP00000113916
Original member Current member EBI ENSMUST00000232013.1 ENSMUSP00000155886.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232013.1Link to Ensembl Protein Viewer:ENSMUSP00000155886.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232013Re-query CCDS DB by Protein ID:ENSMUSP00000155886
Original member Current member EBI ENSMUST00000232265.1 ENSMUSP00000156173.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232265.1Link to Ensembl Protein Viewer:ENSMUSP00000156173.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232265Re-query CCDS DB by Protein ID:ENSMUSP00000156173
Original member Current member EBI ENSMUST00000231874.1 ENSMUSP00000156199.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231874.1Link to Ensembl Protein Viewer:ENSMUSP00000156199.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231874Re-query CCDS DB by Protein ID:ENSMUSP00000156199
Original member Current member NCBI NM_001025427.3 NP_001020598.1 Accepted alive Link to Nucleotide Sequence:NM_001025427.3Link to Protein Sequence:NP_001020598.1Re-query CCDS DB by Nucleotide ID:NM_001025427Re-query CCDS DB by Protein ID:NP_001020598Link to BLAST:NP_001020598.1
Original member Current member NCBI NM_001039356.2 NP_001034445.1 Accepted alive Link to Nucleotide Sequence:NM_001039356.2Link to Protein Sequence:NP_001034445.1Re-query CCDS DB by Nucleotide ID:NM_001039356Re-query CCDS DB by Protein ID:NP_001034445Link to BLAST:NP_001034445.1
Original member Current member NCBI NM_001166535.1 NP_001160007.1 Accepted alive Link to Nucleotide Sequence:NM_001166535.1Link to Protein Sequence:NP_001160007.1Re-query CCDS DB by Nucleotide ID:NM_001166535Re-query CCDS DB by Protein ID:NP_001160007Link to BLAST:NP_001160007.1
Original member Current member NCBI NM_001166536.1 NP_001160008.1 Accepted alive Link to Nucleotide Sequence:NM_001166536.1Link to Protein Sequence:NP_001160008.1Re-query CCDS DB by Nucleotide ID:NM_001166536Re-query CCDS DB by Protein ID:NP_001160008Link to BLAST:NP_001160008.1
Original member Current member NCBI NM_016660.3 NP_057869.2 Accepted alive Link to Nucleotide Sequence:NM_016660.3Link to Protein Sequence:NP_057869.2Re-query CCDS DB by Nucleotide ID:NM_016660Re-query CCDS DB by Protein ID:NP_057869Link to BLAST:NP_057869.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020598.1 107 P17095-2 107 100% 0 0
NP_001034445.1 107 P17095-2 107 100% 0 0
NP_001160007.1 107 P17095-2 107 100% 0 0
NP_001160008.1 107 P17095-2 107 100% 0 0
NP_057869.2 107 P17095-2 107 100% 0 0

Chromosomal Locations for CCDS 28564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27559569 27559703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27560928 27561011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27561461 27561511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27562438 27562491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGAGCGAGTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAAGCAGGAAAAGGATGGGACTGAGAAGC
GAGGCCGGGGCAGGCCACGCAAGCAGCCTCCGGTGAGTCCTGGGACGGCGCTGGTCGGGAGTCAGAAAGA
GCCCAGTGAAGTGCCAACTCCGAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAGAATAAGGGCGCCGCC
AAGACCCGGAAAGTCACCACAGCTCCAGGGAGGAAACCAAGGGGCAGACCCAAGAAACTGGAGAAGGAGG
AAGAGGAGGGCATCTCCCAGGAGTCCTCTGAGGAGGAGCAGTGA

Translation (107 aa):
MSESGSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAA
KTRKVTTAPGRKPRGRPKKLEKEEEEGISQESSEEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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