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Report for CCDS29036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29036.1 Public Mus musculus 18 Map3k8 23 108 98 CCDS HistoryNCBI Gene:26410Re-query CCDS DB by CCDS ID:29036.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025078.9 ENSMUSP00000025078.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025078.9Link to Ensembl Protein Viewer:ENSMUSP00000025078.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025078Re-query CCDS DB by Protein ID:ENSMUSP00000025078
Original member Current member NCBI NM_007746.2 NP_031772.1 Accepted alive Link to Nucleotide Sequence:NM_007746.2Link to Protein Sequence:NP_031772.1Re-query CCDS DB by Nucleotide ID:NM_007746Re-query CCDS DB by Protein ID:NP_031772Link to BLAST:NP_031772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031772.1 467 Q07174 467 100% 0 0

Chromosomal Locations for CCDS 29036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 4332306 4332436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4333818 4334064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4334617 4334769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4339497 4339603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4340547 4340808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4343022 4343189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4348981 4349316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGAGTACATGAGCACTGGAAGTGACGAGAAAGAAGAAATTGATTTATTAATTAAGCATTTAAACGTGT
CAGAAGTCATAGACATAATGGAGAACCTTTATGCAAGTGAAGAGCCAGGAGTGTATGAGCCCAGTCTGAT
GACCATGTATCCAGACAGCAATCAAAATGAGGAACGTTCGGAGTCACTGCTTCGGAGTGGCCAGGAGGTT
CCCTGGCTGTCATCTGTCAGATATGGGACCGTGGAGGATCTGCTTGCATTTGCAAACCATGTCTCCAATA
TGACAAAGCATTTTTATGGACGTCGACCACAAGAATGTGGAATTTTATTAAATATGGTAATCAGTCCCCA
GAATGGCCGCTACCAAATCGATTCGGATGTTCTCCTTGTTCCTTGGAAGCTGACATACAGGAACATCGGC
TCTGGTTTCGTTCCTCGGGGGGCCTTTGGAAAAGTATACTTAGCCCAAGACATGAAGACAAAGAAAAGAA
TGGCGTGCAAACTGATCCCTATAGATCAGTTTAAGCCATCGGATGTGGAAATCCAGGCCTGTTTCCGGCA
TGAGAACATTGCTGAGTTATATGGTGCCGTCCTATGGGGCGATACTGTCCATCTCTTTATGGAAGCCGGC
GAGGGAGGGTCTGTTCTGGAGAAACTGGAGAGTTGTGGGCCCATGAGAGAATTTGAAATTATTTGGGTGA
CGAAGCACATTCTCAAGGGACTTGATTTTCTGCACTCCAAGAAAGTGATCCACCATGATATTAAACCTAG
CAACATTGTATTCATGTCTACAAAAGCTGTTTTGGTAGATTTTGGCCTGAGTGTTAAGATGACTGAAGAT
GTCTATCTTCCCAAGGACCTCCGGGGAACAGAGATATACATGAGCCCAGAGGTGATCCTATGTCGGGGCC
ATTCCACAAAAGCCGACATCTACAGCCTTGGAGCCACACTCATCCACATGCAGACAGGCACCCCACCCTG
GGTGAAGCGCTACCCTCGATCAGCCTATCCCTCCTACCTATACATTATCCACAAGCAGGCACCTCCCCTG
GAAGACATCGCTGGTGACTGCAGTCCAGGCATGAGGGAGCTGATAGAAGCTGCCCTGGAGAGGAACCCCA
ACCACCGCCCCAAAGCAGCAGACCTACTGAAACATGAAGCCCTGAATCCCCCAAGAGAGGACCAGCCACG
ATGTCAGAGTCTGGACTCTGCCCTCTTTGAACGGAAGAGGCTGCTGAGCAGGAAGGAACTACAACTTCCT
GAGAACATTGCTGATTCATCATGCACAGGCAGCACCGAAGAGTCTGAAGTGCTCAGGAGACAGCGTTCCC
TCTACATTGACCTCGGAGCTCTGGCTGGCTACTTCAATATTGTTCGTGGGCCACCAACCCTGGAATACGG
CTGA

Translation (467 aa):
MEYMSTGSDEKEEIDLLIKHLNVSEVIDIMENLYASEEPGVYEPSLMTMYPDSNQNEERSESLLRSGQEV
PWLSSVRYGTVEDLLAFANHVSNMTKHFYGRRPQECGILLNMVISPQNGRYQIDSDVLLVPWKLTYRNIG
SGFVPRGAFGKVYLAQDMKTKKRMACKLIPIDQFKPSDVEIQACFRHENIAELYGAVLWGDTVHLFMEAG
EGGSVLEKLESCGPMREFEIIWVTKHILKGLDFLHSKKVIHHDIKPSNIVFMSTKAVLVDFGLSVKMTED
VYLPKDLRGTEIYMSPEVILCRGHSTKADIYSLGATLIHMQTGTPPWVKRYPRSAYPSYLYIIHKQAPPL
EDIAGDCSPGMRELIEAALERNPNHRPKAADLLKHEALNPPREDQPRCQSLDSALFERKRLLSRKELQLP
ENIADSSCTGSTEESEVLRRQRSLYIDLGALAGYFNIVRGPPTLEYG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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