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Report for CCDS51750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51750.1 Public Mus musculus 6 Ift56 23 108 98 CCDS HistoryNCBI Gene:264134Re-query CCDS DB by CCDS ID:51750.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51750.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162554.7 ENSMUSP00000124369.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162554.7Link to Ensembl Protein Viewer:ENSMUSP00000124369.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162554Re-query CCDS DB by Protein ID:ENSMUSP00000124369
Original member Current member NCBI NM_153600.2 NP_705828.2 Accepted alive Link to Nucleotide Sequence:NM_153600.2Link to Protein Sequence:NP_705828.2Re-query CCDS DB by Nucleotide ID:NM_153600Re-query CCDS DB by Protein ID:NP_705828Link to BLAST:NP_705828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705828.2 554 Q8BS45 554 100% 0 0

Chromosomal Locations for CCDS 51750.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38381591 38381593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38382076 38382213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38385433 38385525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38387597 38387711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38389982 38390031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38391419 38391564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38395022 38395193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38398283 38398357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38401047 38401149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38403467 38403522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38404482 38404535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38405937 38406000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38409415 38409503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38410774 38410857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38412024 38412093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38421539 38421645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38423350 38423483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38425128 38425239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGATGCTTTCAAGGGCCAAACCCGCTGTGGGCGGGGAGTCACCGCACACTGACAAAAGAAAGAAGAAAG
GGAGGAAGATTCCAAAACTAGAGGATCTACTTTCGCAGAGAGATTTCACTGGCGCCATTACCCTATTGGA
GTTCAAGCGCCACGTTGGGGAGCAAGAAGACGACACTAACTTATGGATTGGATACTGTGCTTTTCACCTG
GGTGACTACAAGAGAGCTTTGGAGGAATATGAAAATGCAACGAAGGAGGAAAATTGCAATCCAGAAGTGT
GGGTGAACTTGGCCTGCACCTACTTTTTTCTTGGGATGTATAAACAAGCAGAAGCTGCTGGGTTTAAAGC
TCCAAAAAGCCGGCTCCAAAACCGCCTACTGTTCCATCTGGCTCACAAGTTTAATGATGAGAAGAAATTA
ATGAACTTTCATCAGAATCTTCAGGATATCAAGGAAGACCAGCTTAGTTTGGCCTCAATCCACTACATGC
GATCCCATTACCAAGAAGCTATTGATATATACAAGCGGATCCTGCTGGACAACAGGGAATACCTGGCCCT
CAATGTGTATGTGGCCCTCTGCTACTACAAACTGGATTACTATGATGTGTCTCAAGAAGTCCTGGCTGTT
TACCTTCAGCAGATTCCTGACAGTACCATCGCCCTCAACCTTAAGGCCTGCAATCACTTTCGCCTTTATA
ACGGCAAAGCAGCTGAGGCAGAGCTCAAAAGCTTGATGGACAATGCATCTTCACCCTTTGAATTTGCTAA
AGAACTCATCAGGCACAATCTGGTTGTTTTCCGAGGAGGCGAAGGGGCTTTGCAGGTTTTACCTCCCCTG
GTTGATGTCATTCCTGAAGCTAGGCTCAACCTAGTGATTTACTACCTTCGTCAAGATGATGTGCAGGAAG
CCTATAATTTAATCAAGGATTTGGAACCCACTACACCTCAGGAGTATATCCTCAAGGGAGTTGTCAATGC
AGCCCTTGGCCAGGAAATGGGTTCAAGGGATCATATGAAAATTGCCCAGCAGTTTTTCCAGTTGGTAGGA
GGATCAGCTAGTGAATGTGATACAATACCAGGAAGGCAGTGCATGGCTTCCTGTTTCTTCCTACTTAAAC
AATTTGATGATGTCTTGATTTACCTCAACTCTTTTAAGAGTTACTTCTATAATGATGACATCTTTAACTT
TAATTATGCCCAAGCCAAAGCTGCAACAGGCAATACCAGTGAGGGTGAAGAGGTTTTCCTCTTGATCCAA
AGTGAGAAACTGAAAAATGACTACATTTACCTTAGCTGGTTAGCTCGCTGCTATATTATGAATAAGAAAC
CAAGACTAGCTTGGGAGCTTTATCTCAAGATGGAAACCTCTGGCGAGTCCTTCAGCCTCTTACAGCTCAT
TGCCAATGACTGTTACAAGATGGGCCAGTTCTACTATTCAGCCAAAGCTTTTGATGTCTTAGAAAGACTG
GATCCCAACCCTGAGTACTGGGAAGGCAAGAGGGGTGCCTGTGTGGGCATCTTCCAGATGATCTTAGCTG
GGAGAGAACCCAAAGAGACCCTCCGAGAAGTGCTGCATTTACTGAGAAGCACAGGAAACACCCAAGTGGA
GTATATCATCAGGATCATGAAGAAGTGGGCCAAGGAGAATAGAGTGCCCATCTAA

Translation (554 aa):
MMLSRAKPAVGGESPHTDKRKKKGRKIPKLEDLLSQRDFTGAITLLEFKRHVGEQEDDTNLWIGYCAFHL
GDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNRLLFHLAHKFNDEKKL
MNFHQNLQDIKEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAV
YLQQIPDSTIALNLKACNHFRLYNGKAAEAELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQVLPPL
VDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVG
GSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQ
SEKLKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERL
DPNPEYWEGKRGACVGIFQMILAGREPKETLREVLHLLRSTGNTQVEYIIRIMKKWAKENRVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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