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Report for CCDS48945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48945.1 Public Mus musculus 11 Meioc 23 108 98 CCDS HistoryNCBI Gene:268491Re-query CCDS DB by CCDS ID:48945.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 48945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100378.3 ENSMUSP00000097947.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100378.3Link to Ensembl Protein Viewer:ENSMUSP00000097947.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100378Re-query CCDS DB by Protein ID:ENSMUSP00000097947
Original member Current member NCBI NM_001127576.2 NP_001121048.1 Accepted alive Link to Nucleotide Sequence:NM_001127576.2Link to Protein Sequence:NP_001121048.1Re-query CCDS DB by Nucleotide ID:NM_001127576Re-query CCDS DB by Protein ID:NP_001121048Link to BLAST:NP_001121048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121048.1 965 A2AG06-1 965 100% 0 0

Chromosomal Locations for CCDS 48945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102665765 102665830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102666336 102666485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102668302 102668459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102672184 102672288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102674039 102675911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102676734 102676868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102679932 102680112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102680510 102680739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2898 nt):
ATGGAGGTGAGCGGCGGAGACACCTGCCGGCCCCGTCACCCCCAAGGCCTGAGGGAGGGACCTGAGCCGA
AGGTGGCGGCGGCCGCGGCGGCGTTCCGTGGAAGCGCGAATCGGTGCTGGAACCTCAGCGTCGACACCAG
CAATAGATTATCCGACGTCTTCAACAGCATGATGCTGACCGGCTCGGCGCCCTTCTATGATTGCTACAAG
TCTCAGAACGAAGACAATGTAGACCTAAGGCAGACCTGCACTCCACTCTCCTCATCAACAGAGTATGCAA
GTTCTATAGACTCCTCACTCTTCTATGCACCATGGTCTACTTACGGAGACGATATTAAACAACCTCCCAG
TTCTCAGATCAGTGTAAAGAACAGGATTCAGACCGAAAGAAATGACTATGGCAGTGAAACAGACTTATAT
GGACTCGTGTCTAACATTTTGGAAGAACAGGATAAGTCGCAGCCATATTTTGCTGAAGGGACCTGCTCCT
CCAACTTAAAGTCAGTTTGGCCAATGAACACAAGCAGATTTGTAGATCACCATGACCTCTTAACAGAACC
CAAAAGGCCAGTAGATACATCTATCTCTCAGCAAGCGTTTTATAGTGGTGAATCTGTGTCAGCAGTGGAA
AAGCAATACTTGCATAATAGTTCTCTCACACCACAGCAAAAAATAGATGAGCTTTATCATGGTTATACTG
GTTTAGACCTTGAAGAACAATGGCTGTACCTTTCAAGAAGTGATCATTCTAACTGTTACAATAGTCAGGC
TAATGATACAGTTAAGGCAACTTTCCAAGAATATCCATTTGTCAAAAACTGTTTTACACCACAGACTGGC
CTGTCTGATATCATGAAAGAATCAGGAATTGATACTTATGCCTATGGAAGAGAGAAAATATGTACTAAAG
GTCTTGAAACACCATTACAGCATAAAAGGGCAGAGATATTTCTTTCCCAATTTAATAGATATAATGAAAA
TGCAGATTATTGTAGATATCCAGAATATGCTCATCCTAATAAGGCAAAGCTTAACAAATGTTCAAATTTT
AGTGTCCAAGATGGTAAAAAGTTAGCCAATGGCACACCTGAGACACCAACTGTGGAAGCAGATGCCTATA
CGAAGTTATTTCAAGTTAAACCAGCAAATCAGAAAAAAATGGAGGAGACAATACCTGACCAGCAGAATTT
TGCATTTCCAAAAACAACACCACATCTGACAGAAAAACAGTTTGCAAAGGAAGCAGCATTCACTGCTGAT
TTTGGCTTAAAATCAGAATATGGACTAAAGCCTCACACAGCTTGTCCAACTAATAATGATTTTGCTAATG
TCTCTGAAAAGCAACAGTTTGCTAAGCCTGACCCCCTAAACTCTGAATATTTTAAATCAGTGAATTTATT
CTCAAATTCAGCAACATCTTCAGGAGGTATCAGTTTAAACAGACCAACTTGGATGAATGTTCAAACAAAA
AATAACCTTCCTATTCCTTATCGAAATCAAGGTAACTTGATGAAATTGAATAGTCATTTAAGTGCAGCTT
CAAAAGGTTCTAACCACTCTTCAGATTTTCCCCAACTTTCATCTACAAATTTAACTTCAAATAGCAACTT
ATTTCAGAAGTATTGCCAAGAAAACCCTTCAGCATTTTCTAGTTTTGATTTTAGTTACAACGGTGCAGAA
AGAATTCAGTCTGTGAATCACATGGAAGGACTAACAAAAACCGGAGAAGACAATCTCTTTGAATCAGTTA
CAGAGAAAAAAATAAAGCAGCCAAATGGATTTTGTGATAGCTATTCAGCTTCACAGTATGGGATAATAGA
AAATGTAAACAAACATAATTTTCAAGCCAAGCCCCAGAGTGGACATTATGATCCTGAGGACATTCCAAAG
CATTTTGATGGCTTACCTCAAAATACATATCAAGATCTGTTAGAGTCACAGGGTCATTTTAATAGCCACA
GACAAGGAAGTGGAGACAACAATATTAATAGCCGTGTGAATCGCACACAGGCCTCATGCTTTTCTAATAA
TTATATGATGGGAGATTTACGACATAATCAGGGTTTTCAACAACTTGGTTCAAATGGGTTTCCCCTAAGA
TCTACCCACCCATTTGGCCATTCAGTTGTTCCACTGTTGGATTCCTATGATTTGTTTTCTTATGATGACT
TAAGCCATTTATATCCTTATTTTAATGACATGATGTATGGTGATAATTCCTTTTCTGGTTTTGTGCCAAC
TTTTGGATTTCAAAGACCAATTAAAACCCGTAGTGGACCAGCTAGTGAGCTTCATATTCGTCTAGAAGAG
TGCTATGAACAATGGCGAGCATTGGAAAAGGAGAGAAAAAAGACTGAATTAGCCCTTGCCAAGAATTATC
CAGGAAAAAAAGTATCCAGTACTAATAATACTCCAATTCCAAGACTGACTTCCAACCCATCTAGAGTTGA
TCGGTTAATTGTGGATGAACTTCGAGAACAAGCCAGAGTTGTGACTTTACTGGGCAAAATGGAACGTCTT
CGAAGCTCTCCCCTTCATGCTAATATCTCTACTGCTCTTGATAGACACTTGGAGTCAATTCACATTGTAC
AGTCACGTAGAAAGGATGAAATTGTTAATGCTTCAAATCGGCAAAGACAAGGAGTGCCTAGGTGCCAAGA
TGACAGAGATGTGTTTGCCCTTGCTACAGCAATTAAAGAGATGTGTGTAGCTACTCGAAAAGCACGCACT
ACCCTATGGTGTGCACTGCAGATGACCTTGCCCAAAACAGCAAGTACAGCGGGCCAAGCTGACATGGAAA
AGGCTTTCCAAGATCTAGTAAACTGTGAAGAGAAAGTCCATGAAAGCATAAATAGTAGCAATCCAATGAA
CCAGAGAGGTGAAACAAGTAAACATTAA

Translation (965 aa):
MEVSGGDTCRPRHPQGLREGPEPKVAAAAAAFRGSANRCWNLSVDTSNRLSDVFNSMMLTGSAPFYDCYK
SQNEDNVDLRQTCTPLSSSTEYASSIDSSLFYAPWSTYGDDIKQPPSSQISVKNRIQTERNDYGSETDLY
GLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFVDHHDLLTEPKRPVDTSISQQAFYSGESVSAVE
KQYLHNSSLTPQQKIDELYHGYTGLDLEEQWLYLSRSDHSNCYNSQANDTVKATFQEYPFVKNCFTPQTG
LSDIMKESGIDTYAYGREKICTKGLETPLQHKRAEIFLSQFNRYNENADYCRYPEYAHPNKAKLNKCSNF
SVQDGKKLANGTPETPTVEADAYTKLFQVKPANQKKMEETIPDQQNFAFPKTTPHLTEKQFAKEAAFTAD
FGLKSEYGLKPHTACPTNNDFANVSEKQQFAKPDPLNSEYFKSVNLFSNSATSSGGISLNRPTWMNVQTK
NNLPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTSNSNLFQKYCQENPSAFSSFDFSYNGAE
RIQSVNHMEGLTKTGEDNLFESVTEKKIKQPNGFCDSYSASQYGIIENVNKHNFQAKPQSGHYDPEDIPK
HFDGLPQNTYQDLLESQGHFNSHRQGSGDNNINSRVNRTQASCFSNNYMMGDLRHNQGFQQLGSNGFPLR
STHPFGHSVVPLLDSYDLFSYDDLSHLYPYFNDMMYGDNSFSGFVPTFGFQRPIKTRSGPASELHIRLEE
CYEQWRALEKERKKTELALAKNYPGKKVSSTNNTPIPRLTSNPSRVDRLIVDELREQARVVTLLGKMERL
RSSPLHANISTALDRHLESIHIVQSRRKDEIVNASNRQRQGVPRCQDDRDVFALATAIKEMCVATRKART
TLWCALQMTLPKTASTAGQADMEKAFQDLVNCEEKVHESINSSNPMNQRGETSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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