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Report for CCDS27760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27760.1 Public Mus musculus 15 Abcd2 23 108 98 CCDS HistoryNCBI Gene:26874Re-query CCDS DB by CCDS ID:27760.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069511.7 ENSMUSP00000068940.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069511.7Link to Ensembl Protein Viewer:ENSMUSP00000068940.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069511Re-query CCDS DB by Protein ID:ENSMUSP00000068940
Original member NCBI NM_011994.3 NP_036124.2 Updated not alive Link to Nucleotide Sequence:NM_011994.3Link to Protein Sequence:NP_036124.2Re-query CCDS DB by Nucleotide ID:NM_011994Re-query CCDS DB by Protein ID:NP_036124
Current member NCBI NM_011994.4 NP_036124.2 Accepted alive Link to Nucleotide Sequence:NM_011994.4Link to Protein Sequence:NP_036124.2Re-query CCDS DB by Nucleotide ID:NM_011994Re-query CCDS DB by Protein ID:NP_036124Link to BLAST:NP_036124.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036124.2 741 Q61285 741 100% 0 0

Chromosomal Locations for CCDS 27760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 91148986 91149205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91151655 91151780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91159104 91159188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91163054 91163199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91174591 91174736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91178231 91178325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91179076 91179241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91182681 91182802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91188835 91189015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91190670 91191608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGATACACATGCTAAATGCAGCAGCCTATCGGGTGAAATGGACCAGATCCGGTGCTGCTAAAAGGGCTG
CCTGCCTGGTGGCTGCGGCATATGCTCTGAAAACCCTCTATCCCATCATTGGCAAGCGTTTAAAGCAGCC
TGGCCACAGGAAGGCAAAAGCAGAAGCTTACTCGCCTGCAGAGAACAGAGAAATACTGCATTGCACGGAG
ATCATCTGTAAAAAACCTGCGCCGGGACTAAATGCAGCTTTTTTCAAACAGCTACTAGAACTTCGGAAAA
TCCTCTTTCCAAAACTTGTGACCACTGAAACGGGGTGGCTCTGCCTCCACTCGGTGGCTCTAATCTCAAG
AACATTTCTCTCTATTTATGTGGCTGGTCTGGATGGGAAAATCGTGAAAAGCATCGTGGAAAAGAAGCCT
CGGACTTTCATCATCAAATTAATCAAGTGGCTTATGATTGCTATCCCTGCTACCTTTGTCAACAGTGCTA
TCAGGTACCTGGAATGCAAACTGGCATTGGCCTTTAGAACTCGCTTAGTAGACCATGCCTATGAGACCTA
TTTCGCAAATCAGACTTATTATAAGGTGATAAATATGGATGGGAGGCTGGCAAACCCTGACCAGTCTCTT
ACCGAAGACATTATGATGTTCTCGCAATCTGTGGCTCACCTGTATTCCAACCTTACCAAACCTATTTTAG
ATGTCATTCTAACCTCCTATACTCTCATCCGGACAGCTACATCCAGAGGAGCAAGCCCTATAGGGCCCAC
CCTGTTAGCAGGACTTGTCGTGTATGCCACTGCTAAAGTACTGAAAGCTTGCTCGCCCAAATTTGGTTCG
CTGGTGGCTGAAGAAGCCCACAGGAAAGGCTACCTGCGGTATGTCCACTCCCGAATCATAGCCAATGTAG
AAGAAATTGCCTTCTACAGAGGACATAAGGTAGAAATGAAGCAGCTGCAGAAATGTTACAAGGCTTTAGC
TTACCAGATGAACCTGATTTTATCCAAACGTTTATGGTACATCATGATAGAACAATTCTTGATGAAGTAT
GTGTGGAGCAGCTGTGGACTAATTATGGTGGCTATACCCATTATCACTGCAACGGGCTTTGCAGATGGTG
ATCTGGAGGATGGTCCAAAGCAGGCTATGGTTAGCGATCGGACAGAGGCCTTCACCACTGCCCGGAACTT
ACTGGCCTCTGGAGCTGATGCAATTGAAAGGATTATGTCTTCATACAAAGAGATCACTGAACTAGCAGGT
TATACTGCTAGAGTATACAATATGTTCTGGGTCTTCGATGAAGTGAAGAGAGGCATTTATAAGAGAACTG
TCACTCAGGAACCTGAAAACCATAGCAAGCGTGGAGGTAACCTGGAACTACCCCTCAGCGACACCCTGGC
CATCAAAGGAACAGTTATTGATGTGGATCATGGAATCATTTGTGAAAATGTTCCCATAATTACACCAGCG
GGCGAAGTGGTGGCTTCCAGGCTAAACTTCAAAGTGGAAGAAGGGATGCATCTCTTGATAACTGGTCCCA
ACGGTTGTGGGAAAAGCTCTCTCTTCAGAATCTTAAGCGGGCTGTGGCCTGTGTATGAAGGAGTCCTTTA
TAAACCGCCTCCCCAACATATGTTCTATATTCCACAGAGGCCATACATGTCTCTTGGAAGTCTCCGGGAT
CAAGTAATTTACCCTGACTCAGCGGATGACATGCGTGAGAAAGGTTACACTGACCAAGACCTAGAACGCA
TCCTGCACAGCGTGCACCTCTACCACATAGTTCAAAGAGAAGGAGGATGGGATGCAGTCATGGACTGGAA
AGATGTCCTTTCCGGAGGGGAGAAGCAGAGAATGGGCATGGCGCGGATGTTTTACCATAAACCGAAGTAT
GCATTGCTGGATGAATGTACCAGTGCCGTGAGCATCGACGTTGAAGGAAAGATATTTCAGGCTGCTATTG
GGGCTGGGATTTCCCTACTCTCCATAACACACAGGCCTTCTCTGTGGAAATACCACACTCATCTATTACA
ATTCGATGGCGAAGGAGGCTGGCGCTTTGAACAGTTGGACACTGCTATCCGTTTAACGTTGAGTGAGGAA
AAGCAAAAGTTGGAGTCGCAGCTCGCTGGAATTCCCAAAATGCAACAGAGACTCAACGAACTATGCAAAA
TTCTGGGGGAAGACTCGGTGCTGAAAACAATCCAAACTGCAGAAAAGACATCCTAA

Translation (741 aa):
MIHMLNAAAYRVKWTRSGAAKRAACLVAAAYALKTLYPIIGKRLKQPGHRKAKAEAYSPAENREILHCTE
IICKKPAPGLNAAFFKQLLELRKILFPKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKP
RTFIIKLIKWLMIAIPATFVNSAIRYLECKLALAFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSL
TEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSPKFGS
LVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKY
VWSSCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARNLLASGADAIERIMSSYKEITELAG
YTARVYNMFWVFDEVKRGIYKRTVTQEPENHSKRGGNLELPLSDTLAIKGTVIDVDHGIICENVPIITPA
GEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVLYKPPPQHMFYIPQRPYMSLGSLRD
QVIYPDSADDMREKGYTDQDLERILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKY
ALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQFDGEGGWRFEQLDTAIRLTLSEE
KQKLESQLAGIPKMQQRLNELCKILGEDSVLKTIQTAEKTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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