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Report for CCDS27492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27492.1 Public Mus musculus 15 Klhl38 23 108 98 CCDS HistoryNCBI Gene:268807Re-query CCDS DB by CCDS ID:27492.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022985.1 ENSMUSP00000022985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022985.1Link to Ensembl Protein Viewer:ENSMUSP00000022985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000022985Re-query CCDS DB by Protein ID:ENSMUSP00000022985
Original member Current member NCBI NM_177755.3 NP_808423.1 Accepted alive Link to Nucleotide Sequence:NM_177755.3Link to Protein Sequence:NP_808423.1Re-query CCDS DB by Nucleotide ID:NM_177755Re-query CCDS DB by Protein ID:NP_808423Link to BLAST:NP_808423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808423.1 581 Q8BSF5 581 100% 0 0

Chromosomal Locations for CCDS 27492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58314827 58315116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58316227 58316332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58321982 58323331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGATGAGGAGTTACCAGATGGGGTTGTCTTCAAAGACCACAGCTTCTCCTCTGACTTGTTAAGACAGC
TCAATGGCTTAAGACAAAGCAAGATCCTGACTGATGTGAGCATCTGCTCCGGGGCCTGGGAGGTCCCTTG
TCACCGCAGTGTGCTGGCCTCCAGCAGCCCCTACTTCAAGGCCATGTTCTGCAGCCACTTCCGGGAGAGC
AGAGAGGCCAAAGTGCAGATGAAAGGCATCAGTTCCACAACTCTGGAGCAGGTCATTACGTATGTGTATA
CGGGAGAGGTTCATATCTCAGCTGCCAACGTCCTCCCACTGATGGAGGCTGCTGCCATGCTGCAGTATCC
CCGGGTGTTTGAGGCCTGCTCCTCATACCTCCAGAGCCAGCTGGCCCCCAGCAATTGCCTGGGCCTAGTC
AGACTCGCAGAAATCTTAAGCTGTGACAGCCTTAAGAAGAAAGCGAAGGAGGTGGCCCTGACTTACTTCC
CAGAGGTGGCAGCATCAGCTGACCTGAAGGAGCTCTGCGCCATGGAGCTGAGGGACTACCTGGGAGATGA
CAGGCTCTGTGGTGAGGAGGAAAAGGTGTTCGAGGCCCTCATGGCTTGGGTGAAGCATGACCTTCAAGCC
CGGTGGAGGCACATGCAGGAACTGCTGCAGCAGGTCCGCCTGCAGTACATCCACCCAGCCTTCTTCCATC
ACTTCATTGCCAATGACGCCCTCCTCCAGTCCTCGCCTGCTTGCCAGGCCATCCTGGAGATGGCCAGGAA
ACAGATCTTCTCTTTGTATGGTCCCAGTGCCCAGGATTGTAAACTCCTATGGCGCATGCCCCCAAGGAGC
TCCTACCAAGACTTCCTCCTCCTCCTTGGGGGACGGAAGGACAACCAGCAGACCACCAGGGATGTCTTGC
TCTACAGTGGACAGACTGGCCAGTGGCAGAGCCTAGCCAAGCTTCCCATACGGTTGTACAAGGCCTCAGC
TGTCACCTTGCACCGGAGCGTCTATGTGCTCGGGGGCATGACTGTCAGTGAGGGAAAGAGTCTCATTAGC
TGTGGTGTGTATATCTTTTCTCTGAAACTCAACCAGTGGAGGGTGGGGGAGCCCATGCTGGCAGCCCGCT
ACTCCCACAGAAGCACCACCCACAGGAACTTCATCTTCTCCATTGGGGGTACTGGAGAAGGGCAGGAGCT
TCTGGCCTCCATGGAGAGGTATGACAGCATCCGTGACGTCTGGGAGAGCATGGCTGGCATGCCAGTGGCT
GTGCTCCACCCTGCCGTAGCAGTGAAGGACCAAAGACTCTATCTTTTTGGGGGTGAGGACATCATGCAGA
ACCCTGTACGCCTTATCCAGGTTTACCACATTTCCAGGAACACCTGGTACAAAATGGAGACAAGGATGAT
CAAGAATGTGTGTGCCCCTGCAGTGGTACTGGGGGAACAGATCGTCATTGTAGGAGGTTACACAAGGAGG
ATTCTTGCTTACGATCCTCAGTCCAACAAATTTGTCAAGTGTGCGGACATGAAAGACCGAAGGATGCACC
ATGGGGCCACGGTGATGGGGAACAAGCTGTACGTGACAGGTGGACGGCGGCTGACCACAGACTGTAACAT
CGAGGACTCAGCTTCCTTTGACTGCTACGACCCAGAGACGGACACTTGGACATCCCAGGGACAGCTACCT
CACAAACTCTTTGACCATGCCTGCCTGACCCTCCAGTGCATACCCCACATGACCAGCCTCTCTTGA

Translation (581 aa):
MDEELPDGVVFKDHSFSSDLLRQLNGLRQSKILTDVSICSGAWEVPCHRSVLASSSPYFKAMFCSHFRES
REAKVQMKGISSTTLEQVITYVYTGEVHISAANVLPLMEAAAMLQYPRVFEACSSYLQSQLAPSNCLGLV
RLAEILSCDSLKKKAKEVALTYFPEVAASADLKELCAMELRDYLGDDRLCGEEEKVFEALMAWVKHDLQA
RWRHMQELLQQVRLQYIHPAFFHHFIANDALLQSSPACQAILEMARKQIFSLYGPSAQDCKLLWRMPPRS
SYQDFLLLLGGRKDNQQTTRDVLLYSGQTGQWQSLAKLPIRLYKASAVTLHRSVYVLGGMTVSEGKSLIS
CGVYIFSLKLNQWRVGEPMLAARYSHRSTTHRNFIFSIGGTGEGQELLASMERYDSIRDVWESMAGMPVA
VLHPAVAVKDQRLYLFGGEDIMQNPVRLIQVYHISRNTWYKMETRMIKNVCAPAVVLGEQIVIVGGYTRR
ILAYDPQSNKFVKCADMKDRRMHHGATVMGNKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLP
HKLFDHACLTLQCIPHMTSLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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