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Report for CCDS51449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51449.1 Public Mus musculus 5 Garem2 23 108 98 CCDS HistoryNCBI Gene:242915Re-query CCDS DB by CCDS ID:51449.1Re-query CCDS DB by GeneID:242915See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058045.4 ENSMUSP00000054208.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058045.4Link to Ensembl Protein Viewer:ENSMUSP00000054208.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058045Re-query CCDS DB by Protein ID:ENSMUSP00000054208
Original member Current member NCBI NM_001167879.1 NP_001161351.1 Accepted alive Link to Nucleotide Sequence:NM_001167879.1Link to Protein Sequence:NP_001161351.1Re-query CCDS DB by Nucleotide ID:NM_001167879Re-query CCDS DB by Protein ID:NP_001161351Link to BLAST:NP_001161351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161351.1 880 Q6PAJ3-1 880 100% 0 0

Chromosomal Locations for CCDS 51449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30105292 30105403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30108252 30108392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30113284 30113414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30113926 30114987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30115887 30116056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30116261 30117287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGGAGAAGCTGGCGGCCGGGCTGGCCGGGCTGCGCTGGAGCATGGGCGCTTTCCCGCTGGACCTCATCG
TCAGCCGCTGCCGCCTGCCCACGCTCGCCTGCCTCGGACCAGGAGAGTATGCTGAGGGAGTCAGTGAACG
AGACATCCTGCTGATCCACTCCTGCCGCCAGTGGACTACAGTGACTGCCCACACCCTGGAGGAGGGCCAC
TATGTCATTGGGCCCAAGATTGACATCCCCCTGCAGTACCCAGGCAAATTCAAGCTCCTGGAGCAGGCTC
GGGACGTGCGGGAGCCTGTAAGATACTTCAGCAGCGTGGAGGAGGTGGCCAGTGTCTTCCCTGACCGAAT
CTTCGTGATGGAAGCCATCACCTTCAGTGTCAAGGTGGTGTCAGGCGAGTTCAGCGAGGACAGCGAGGTG
TACAACTTCACACTGCACGCAGGCGACGAGCTCACTCTCATGGGCCAGGCGGAGATTCTGTGCGCCAAGA
CGACCAAGGAGCGCTCGCGCTTCACCACGCTCCTGCGCAAGCTGGGCCGTGCAGGGGCCTTGGCCGGAAT
CGGCGGCCCCGGGAGCATGGGAGCAACAGGGGGTGGCGGCGGGGCCGCCAGGCCCGTCAAAAGCAAGATG
CCCTGTCTCATCTGCATGAACCACCGCACCAACGAGAGCCTGAGCCTGCCCTTCCAGTGCCAGGGCCGAT
TCAGCACGCGCAGCCCACTGGAGCTGCAGATGCAGGAGGGCGAGCACACGGTGCGCGCCATCATCGAGCG
CGTGCGGCTGCCGGTGAACGTGCTGGTGCCCAGCCGGCCGCCGCGCAACCCCTACGACCTCCACCCGGTG
CGGGAGGGACACTGCTACAAGCTGGTCAGCATCATCTCCAAGACGGTGGTGCTGGGGCTGGCGCTGCGCC
GCGAGGGCCCGGCGCCGCTGCACTTCCTGCTGCTTACGGACACGCCGCGCTTCACTCTGCCGCAGGGTCT
GCTGGCCGGGGACCCGCGCGTCGAGCGCCTGGTGCGCGACAGCGCCTCCTACTGCCGCGAGCGCTTCGAT
CCGGACGAATACTCCACTGCTGTGCGCGAGGCGCCCGCGGAGCTCTCCGACGACTGCGCCAGCCCGCGCC
ATGCGCGCCTCTGCCTGCCCGCGCCGCGCGCCCCCGGGGCCGTCCGTGCGCCTGGACCGCCGGGTCGCCT
GGGTCCCGCTTTGCCCGCGCCCGGCGACAGCGATCAGGATTACGTGAGCCCCGATTGGGCGGGTGTGTCC
GAGCCAGCGGGCGGCTGCGCCGAGATCCCTTACGAAGAGCTGTGGGTGCACCAAGCCCCCGAGAGCCGCG
CCGACGCCCGTGCACGGCCGCTAGCGGGGCCGGACCTCATCTCCTTCGGGATCGTGGGGCCCCCACGGCA
TGAGCCAGAGGCACCACCACCTCCTGTCCCTCCCAAATCCGAGGCGGTGAAGGAAGAGTGCCGCCTGCTT
CACGCCCCTCCAGTGCCTCCTAGGGGTGGCGGCAGCTGCAGCAAGCTCACAGGCAGCCCTCCGGTGCTGC
CCCACTTTCCCAAGCTGCAGCCTGTCCACTCGCCCAGCTCCAGTCTCTCCTATTATTCCTCTGGCCTGCA
GGATGGGGCAGGATCCCGCAGTGGCAGTGGCTCCCCGTCACCGGATGCATACTCTCTCTATTGCTACCCT
TGCACCTGGGGAGACTGTAAAGCCAGCGAGTCCTCTAGTCGCCCGCCACCTGGACCCCTGCCTTCTACCA
CCACCCAGCCCAGCCAGGCCTCAAGAGGCCTATCAGAGCCCCTGAGTGGTCGAACCCCCTCCCTCTTGGG
GGCTGACACCCCAGTAGTTAAGAACTACCATAGCTGCCCACCTCTGTTCAAGTCCTCTCGTCCCCAGAAG
TCCTTTGCTCCCTTTGGTGCACTCAACCCCTTCTCTGGGCCTGCCCACCCTTCAGGTGCTCCAGCGGCCT
CCTCCTCTGGGTCCATATCCACCTCGGGTGTCCTGGCTACCTCTAGCCCCACACACTCCCCAGGCCCAGG
CCCAGGCCCACAAGGCCAAGGTTACTCAGCTGCTCCTTCCTCCTCCTTGTCATCCTCTGAGTGGCAGGAG
CCAGCTCTGGAGCCCCTGGACCCATTTGAGCTGGGGCAGGCCAGTCCTCCTGAGCTGGAGCTAGTGCGCT
GTCAGGAGCCCAGAGCTGCGGGGGCACCTGGGTCAGGACCTTGCCTTTCACCACTTGGTCAGCCCAAGGC
CTTTGAGCCCGAAGGTTTGGTGCTGAGGCAGGTCCCTGCCTCACTGTCACCAGCTGCCTTGCAGGGGCCT
GAGGCAGGAGGAACCCTACTCTTTCTCACCCAAGGATGCCTGGAAGGGCCTCCTGGCAGCCCCCGGGAGG
GAGCCACAGGTGCTGGGGTCCGGGATGCCTCCTCCTGGCAGCCACCAGCAGACTTGTCTGCACTCTCCCT
GGAAGAGGTCTCCCGTAGTCTGCGCTTCATTGGGCTCTCAGAGGACGTGGTGAGCTTCTTTGCCCGAGAA
CGCATCGACGGAAGCATCTTTGTGCAGCTCAGTGAAGACATCTTGGCTGACGACTTCCATCTCACCAAGC
TTCAGGTCAAGAAAATCATGCAATTCATCAAAGGTTGGAGACCCAAGATCTGA

Translation (880 aa):
MEKLAAGLAGLRWSMGAFPLDLIVSRCRLPTLACLGPGEYAEGVSERDILLIHSCRQWTTVTAHTLEEGH
YVIGPKIDIPLQYPGKFKLLEQARDVREPVRYFSSVEEVASVFPDRIFVMEAITFSVKVVSGEFSEDSEV
YNFTLHAGDELTLMGQAEILCAKTTKERSRFTTLLRKLGRAGALAGIGGPGSMGATGGGGGAARPVKSKM
PCLICMNHRTNESLSLPFQCQGRFSTRSPLELQMQEGEHTVRAIIERVRLPVNVLVPSRPPRNPYDLHPV
REGHCYKLVSIISKTVVLGLALRREGPAPLHFLLLTDTPRFTLPQGLLAGDPRVERLVRDSASYCRERFD
PDEYSTAVREAPAELSDDCASPRHARLCLPAPRAPGAVRAPGPPGRLGPALPAPGDSDQDYVSPDWAGVS
EPAGGCAEIPYEELWVHQAPESRADARARPLAGPDLISFGIVGPPRHEPEAPPPPVPPKSEAVKEECRLL
HAPPVPPRGGGSCSKLTGSPPVLPHFPKLQPVHSPSSSLSYYSSGLQDGAGSRSGSGSPSPDAYSLYCYP
CTWGDCKASESSSRPPPGPLPSTTTQPSQASRGLSEPLSGRTPSLLGADTPVVKNYHSCPPLFKSSRPQK
SFAPFGALNPFSGPAHPSGAPAASSSGSISTSGVLATSSPTHSPGPGPGPQGQGYSAAPSSSLSSSEWQE
PALEPLDPFELGQASPPELELVRCQEPRAAGAPGSGPCLSPLGQPKAFEPEGLVLRQVPASLSPAALQGP
EAGGTLLFLTQGCLEGPPGSPREGATGAGVRDASSWQPPADLSALSLEEVSRSLRFIGLSEDVVSFFARE
RIDGSIFVQLSEDILADDFHLTKLQVKKIMQFIKGWRPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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