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Report for CCDS29672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29672.1 Public Mus musculus 19 Or1s2 23 108 98 CCDS HistoryNCBI Gene:258991Re-query CCDS DB by CCDS ID:29672.1Re-query CCDS DB by GeneID:258991See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219412.1 ENSMUSP00000151386.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219412.1Link to Ensembl Protein Viewer:ENSMUSP00000151386.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219412Re-query CCDS DB by Protein ID:ENSMUSP00000151386
Original member Current member NCBI NM_146989.2 NP_667200.2 Accepted alive Link to Nucleotide Sequence:NM_146989.2Link to Protein Sequence:NP_667200.2Re-query CCDS DB by Nucleotide ID:NM_146989Re-query CCDS DB by Protein ID:NP_667200Link to BLAST:NP_667200.2

Chromosomal Locations for CCDS 29672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13780614 13781567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAATATGGATCAAGAAAACCAAACCAGCATCTCTGAATTTATCCTCCTGGGTCTCTCCAACCAGGCTG
AGAAGCAAAAACTCATCTTTGTGATTTTCTTGAGTATGTACCTGGTCACTGTGATTGGAAACAGTCTCAT
AATTCTGGCCATTGGTTTGGATATACATCTTCATACTCCTATGTATCTTTTCCTTGCCAACCTATCTTTT
GCTGATATTTCCTCCTCTTCGACTTCAGTCCCTAAAATGCTAATGAATATTCAGACCAATAGTCAATCCA
TTTCCTATGAGGGCTGCATTACACAAATGTACTTTTCTATTGTGTTTGTTGTCATTGACAATTTTCTTTT
GGGGGTAATGGCTTATGATCGATATGTGGCTATCTGCCACCCTCTGAATTATACAAACATCATGCACCCC
AGGTTCTGTCTTTTACTTTCTTTCTGTCCATGGGCTCTAAGCAATATTGTTGCCCTGACACATACTCTTC
TGGCCAATCAATTGATTTTTTGCAACCATAACACCATCCAACACTTCTTCTGTGACTTGGCCCCTCTGAT
CAAACTTTCCTGCTCAGATGCAATGATCAATGAACTTGTAAAATTTGTTGTGGGATTATCAGTCATCACC
TTTCCCTTTGCCCTCATTCTCTTCTCCTATGTCTGCATCATCAGGGATGTACTGAGAATTTCATCCACGG
AAGGAAAGTGGAAAGCCTTCTCTACCTGTGGCTCTCACCTGACAATTGTATTCCTTTTCTATGGTACCAT
TGTAGGGGTTTACTTTTTCCCTTCATCCACTCACCCTGAGGACACAGACAAGATTGGTGCAGTACTCTTC
ACAGTGGTGACACCCATGTTAAACCCTTTCATCTATAGCCTGAGAAATAAGGACATGAAAGGTGCCCTTA
GGAAGCTCATCAATAAAAGTCATTTGCTCCCTTTGATGTCATGA

Translation (317 aa):
MNMDQENQTSISEFILLGLSNQAEKQKLIFVIFLSMYLVTVIGNSLIILAIGLDIHLHTPMYLFLANLSF
ADISSSSTSVPKMLMNIQTNSQSISYEGCITQMYFSIVFVVIDNFLLGVMAYDRYVAICHPLNYTNIMHP
RFCLLLSFCPWALSNIVALTHTLLANQLIFCNHNTIQHFFCDLAPLIKLSCSDAMINELVKFVVGLSVIT
FPFALILFSYVCIIRDVLRISSTEGKWKAFSTCGSHLTIVFLFYGTIVGVYFFPSSTHPEDTDKIGAVLF
TVVTPMLNPFIYSLRNKDMKGALRKLINKSHLLPLMS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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