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Report for CCDS29092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29092.1 Public Mus musculus 18 Ccdc178 23 108 98 CCDS HistoryNCBI Gene:70950Re-query CCDS DB by CCDS ID:29092.1Re-query CCDS DB by GeneID:70950See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025160.8 ENSMUSP00000025160.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025160.8Link to Ensembl Protein Viewer:ENSMUSP00000025160.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025160Re-query CCDS DB by Protein ID:ENSMUSP00000025160
Original member Current member EBI ENSMUST00000115837.2 ENSMUSP00000111503.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115837.2Link to Ensembl Protein Viewer:ENSMUSP00000111503.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115837Re-query CCDS DB by Protein ID:ENSMUSP00000111503
Original member Current member EBI ENSMUST00000234736.1 ENSMUSP00000157323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234736.1Link to Ensembl Protein Viewer:ENSMUSP00000157323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234736Re-query CCDS DB by Protein ID:ENSMUSP00000157323
Original member Current member NCBI NM_027616.3 NP_081892.2 Accepted alive Link to Nucleotide Sequence:NM_027616.3Link to Protein Sequence:NP_081892.2Re-query CCDS DB by Nucleotide ID:NM_027616Re-query CCDS DB by Protein ID:NP_081892Link to BLAST:NP_081892.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081892.2 866 Q8CDV0 866 100% 0 0

Chromosomal Locations for CCDS 29092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 21811500 21811580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21844889 21845023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21914947 21915096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22017340 22017499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22018981 22019126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22020822 22020935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22022997 22023158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22024747 22024809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22033541 22033724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22067340 22067476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22067630 22067725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22097640 22097793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22105540 22105682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22109681 22109901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22120526 22120726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22130097 22130176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22131415 22131437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22135078 22135217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22145454 22145543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22146944 22147003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22150411 22150471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2601 nt):
ATGCCAGAAAACGAGAAAGAGCCAGCTCAACCTACTACCAATGAGGATGCACTTGATACAGGTAAAACAT
GTCTTCAAATAAAGGAGCTCAAAGACAAAGAAAGGGCATTAATGCTTGCAGAAAATGCCAGAATGCAAGG
CTTGTCAGAATTCTTCTTCTCCAGACATGAGGATAAAAGGCTTTATGAAAGTAAATCAACAAATACAGAA
GACGTGAATAAAGCCATCTACTTCAGCTACCCAAGTCGGCGACATAGTTGTACTTTGGTAAATATCCCTA
AACCATGTGTAAACAAAATGATTTCCCACATTGAAGATGTGGAATCTAAAATACAGGAGCATTTGACACA
ATTTGAAGCTTCTTTTGAAGAATGGACTTCTGTCACAAAAGATAAAGAGGCAGGTTTGGACGTCTCTGCT
CCAGAGAAACAAGTCCACCCAGAAAAAGGAAAGGATGAGAAGTGTCCCGAGTTGAAGAAGAGGATGGAGA
CATTGCTATCAGAGGCCATCCACCTCATTAAAAGTCTGGAAACTGACAGAGCAGAAGCAGAACAAGCTTT
AAAACAACACAAATCACGAAAGAAAAAGATTAGCATGAAAATTGACTCTTGGTCCATTTGGAAGCTCCAA
GAACTCCCATTAGCTGTACAGAAAGAACATGAGAACTTCTCCAAAATTAATGCAGAGCTGCGTAGCTATC
TTGAAGACATTGCCCTTAAGGTGGAGCAACTGCAGGAGCGGAAGGAGAAGCTGGAAAAAGCCAATGCGAA
GCTCCAGGTGGACATAGACTACATGGCTTCTCATAGTGTTCTGCTGGAGAAAAAGCGCAAGCAGGAGCTA
GGATGTCTGAAAGAGCGTTACCATAAAAAGTTTGAGGTAATGGAAAAATTTAGAGCAATTCATGAAGAGC
TTAAAGAGTCTGTGGATAAATGTGAAGGTGCAAAAGCAAGGCTTAAGAATATGAAAGTAGAGAATGAAAG
AGAAATTCAAGAAGAATTAATAAATGCAACGTCCTATGAGAAAGAACTAGATAAGCTTAGCGTCCTGGAT
GCCCACTACACAACTTCAATTGAGACTGTTAACTTGGACATTGAAGGTGATGAAGAAGCCATGAATGAGG
TGCTGAGAGAAACACAGAGCACAACAAATGAACTGGAGAATTTAAAGAAAACAGTAGATGACTTGAAAAG
ACTGTTTGATCAATATTGCTGGAGACAAAGAAAATATGAAAATGAGTACCTGGAAGCATTTTCTAATTTT
TATTCCTTAAAAAAAACATGGGATATTGAGCTTTCTAATGTTTCAAAAGACGCCAAAGATCTTACAATCG
TATATGAGGCACAGTCAGAAGAAAACAAAAGGATTCAATCTGAAATTCAATCCATCACAGATGACATTGA
AGAAAGTATAAAGAAAACAGCAGAGATGGAAGAAGAAGTCCACACATTTGTGGAAATGAAGATGAAGAAT
AACAACTACCTAAAACAGCTCTACAAGCAGGCCTACCAGGTTGGGGCTGTCTACCACCTCTCTAGACACA
AAACGGAAGAGTTGGAAGATAAACTAGCAGATCTGAAAAGAATATTCAAGGGTAGAGAAGAACTTCTGAA
GAAGCTCACAAGAGGGGACATCGCCACAGGGATTGAGATTCAGAAAAGGCTGTATGCCATTGAAGAAACT
CAGTTTATTGAGATGCAGGAGTTTATACGAAGACAAGTACTCTATAATATGGCTTTGTTAGAAGTAGAGG
AGCAACTGAAAGAGTTAGAAGCCGAGGCTGTGAGAATCAGGTACCTTCACAGACAGCACTCTAAGATGCT
GCATAATATACGGAAGAGGAAAGAAAGAGTTAAAAAAAATGTAGATGCAACAAAGAAAAAATTACTAAAA
AAGAGCAAGAAAAGCCGCATGGAACTCACAAGAACTGAGGGAAAAAGATCCATAATTCATGAAGAAATAG
AGATAGCGAGAGGCCAAACAGTTGCTCTCCACGAGAAGTGCATTGAGCTGAGTAAGGAAATAAGGATAAT
GAACCTAGAAAGGACGAACTATGAAGAAAGACTGAAAAAGTTGCAGGAAGAGTTCTTCAAGCTGCAATTT
GACAGGGAGCACGTGCACGGTGTGTACGACCATCTCATGAGAGAGAAGCAGTACTGTGAAGAGAGGATCT
TTGAAGAGGAGAGGAGGTTCCGAAGGCTTATAGACATGAGGAAGAACACCCTGAAGAATATCAGGAAATG
TCAAGATGATTTACTGGAAGAAAACCTGCGTTTAGCCAAAGAATATCAAAGCGCACAGCTTATTTTCTTA
AAGGAGAAAGAATCTTACTTCAATGGATATGACAGACTGCTATCACTCAATTTTTCTCTTTCTGATAAGA
AAAAGCTCTGTCAGCTGCAAAAAAGGCTGGACCAGAAATGGCAAGAATACTTCCGACTGATGATCCTTTT
TAACAAGACCAAGCTGGCCAAGTTCCAGGGAGACTCCCAGAACAGCATTCAGAAAATATTAGCTGTGCAG
GAGGAATCCTCAAGCCTAATGCAACACATCTTAGATTTCTTCAAGAGTTTCCCAAATAGTTCATGTGGAG
AAGATGACTAA

Translation (866 aa):
MPENEKEPAQPTTNEDALDTGKTCLQIKELKDKERALMLAENARMQGLSEFFFSRHEDKRLYESKSTNTE
DVNKAIYFSYPSRRHSCTLVNIPKPCVNKMISHIEDVESKIQEHLTQFEASFEEWTSVTKDKEAGLDVSA
PEKQVHPEKGKDEKCPELKKRMETLLSEAIHLIKSLETDRAEAEQALKQHKSRKKKISMKIDSWSIWKLQ
ELPLAVQKEHENFSKINAELRSYLEDIALKVEQLQERKEKLEKANAKLQVDIDYMASHSVLLEKKRKQEL
GCLKERYHKKFEVMEKFRAIHEELKESVDKCEGAKARLKNMKVENEREIQEELINATSYEKELDKLSVLD
AHYTTSIETVNLDIEGDEEAMNEVLRETQSTTNELENLKKTVDDLKRLFDQYCWRQRKYENEYLEAFSNF
YSLKKTWDIELSNVSKDAKDLTIVYEAQSEENKRIQSEIQSITDDIEESIKKTAEMEEEVHTFVEMKMKN
NNYLKQLYKQAYQVGAVYHLSRHKTEELEDKLADLKRIFKGREELLKKLTRGDIATGIEIQKRLYAIEET
QFIEMQEFIRRQVLYNMALLEVEEQLKELEAEAVRIRYLHRQHSKMLHNIRKRKERVKKNVDATKKKLLK
KSKKSRMELTRTEGKRSIIHEEIEIARGQTVALHEKCIELSKEIRIMNLERTNYEERLKKLQEEFFKLQF
DREHVHGVYDHLMREKQYCEERIFEEERRFRRLIDMRKNTLKNIRKCQDDLLEENLRLAKEYQSAQLIFL
KEKESYFNGYDRLLSLNFSLSDKKKLCQLQKRLDQKWQEYFRLMILFNKTKLAKFQGDSQNSIQKILAVQ
EESSSLMQHILDFFKSFPNSSCGEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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