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Report for CCDS37692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37692.1 Public Mus musculus 17 Nlrc4 23 108 98 CCDS HistoryNCBI Gene:268973Re-query CCDS DB by CCDS ID:37692.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052124.8 ENSMUSP00000059637.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052124.8Link to Ensembl Protein Viewer:ENSMUSP00000059637.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052124Re-query CCDS DB by Protein ID:ENSMUSP00000059637
Original member Current member NCBI NM_001033367.3 NP_001028539.1 Accepted alive Link to Nucleotide Sequence:NM_001033367.3Link to Protein Sequence:NP_001028539.1Re-query CCDS DB by Nucleotide ID:NM_001033367Re-query CCDS DB by Protein ID:NP_001028539Link to BLAST:NP_001028539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028539.1 1024 Q3UP24 1024 100% 0 0

Chromosomal Locations for CCDS 37692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74426842 74427134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74433735 74433902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74436008 74436100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74437364 74437534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74441894 74441986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74445130 74447124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74447958 74448218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74453053 74453053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGAACTTTATAAGGAACAACAGACGAGCCCTTATTCAAAGGATGGGCTTAACAGTTACCAAGCAAATCT
GCGATGACCTCTTTGCATTGAACGTTCTCAACAATCAAGAAGCTAATGTCATTTACTGTGAGCCCTTGGA
GCAGGAAGCCGCCCGAAAGATCATCCATATGACTATGCAGAAGGGCTCAGCGGCCTGCAACCTCTTTCTT
AAGAGTCTTGAAAACTGGGACTATTTTGTGTATCAGGACTTAACTGGACAAAATCTTTCTTATCAGGTCA
CAGAAGAAGACCTGAATGTTTTGGCCCAGAATTTAAAGGACTTGTACAACAGCCCTGCTTTTCTGAACTT
CTACCCCCTGGGTGAAGATATCGACATAATTTTTAATCTGGAGAAAACCTTCACAGAACCTATCATGTGG
AAGAAGGACCATCGTCATCACCGTGTGGAGCAGCTGACTTTGGGCAGCCTGCTCGAGGCTCTGAAGAGCC
CCTGCCTGATTGAAGGCGAGTCTGGCAAAGGGAAGTCCACCCTGCTGCAGAGAATCGCTATGCTCTGGGC
CTCTGGGGGCTGCAGGGCTCTGAAGGGGTTCAGATTAGTCTTCTTCATCCACCTGAGAAGCGCCAGGGGG
GGACTATTCGAAACACTGTACGATCAGCTCCTGAACATACCCGACTTCATCAGCAAGCCGACCTTCAAGG
CTCTGCTGCTGAAGCTACACAAGGAGGTCCTCTTTCTTCTCGATGGTTACAATGAATTCCATCCCCAGAA
CTGCCCAGAAATTGAAGCCCTGATAAAGGAAAACCATCGCTTCAAGAACATGGTCATTGTCACCACCACC
ACGGAGTGCCTGAGGCATATCAGACATGTTGGCGCCCTGACTGCGGAGGTGGGAGATATGACCGAAGACA
GTGCCAAAGATCTCATCGAGGCAGTGCTGGTACCTGATCAGGTTGAACGCCTGTGGGCCCAAATCCAGGA
GTCCAGGTGCCTGAGAAATCTGATGAAGACCCCTCTCTTCGTGGTGATCACCTGTGCAATTCAGATGGGC
AGACAGGAATTCCAAGCTCACACCCAAACCATGCTGTTCCAAACCTTCTACGACCTCCTGATACAGAAAA
ACAGCCACAGATATAGAGGTGGAGCTTCAGGTGATTTTGCCAGGAGCCTAGACTACTGTGGAGACCTGGC
CCTAGAAGGTGTGTTCGCCCACAAATTTGATTTTGAACCCGAGCATGGGTCCAGCATGAACGAGGACGTC
CTGGTGACAATAGGGCTCCTCTGTAAGTACACAGCTCAGAGGCTGAAGCCCACGTATAAATTCTTTCATA
AATCATTTCAGGAGTACACGGCAGGTCGGAGACTCAGCAGTTTGCTGACGTCCAAAGAGCCAGAGGAGGT
GAGCAAAGGGAACAGCTACTTAAACAAAATGGTTTCCATCTCTGACATCACATCCCTATATGGCAATCTG
CTCCTCTACACGTGTGGGTCGTCCACAGAAGCAACCAGGGCGGTCATGAGGCACCTTGCAATGGTTTATC
AGCACGGCAGCCTACAAGGACTTTCAGTCACCAAGAGGCCTCTCTGGAGGCAGGAATCAATCCAGAGTCT
GAGAAATACCACTGAGCAAGATGTTCTGAAAGCCATCAATGTAAATTCCTTCGTAGAGTGTGGCATCAAT
TTGTTCTCAGAGAGTATGTCTAAATCAGACCTGAGCCAAGAATTTGAAGCTTTCTTTCAAGGTAAAAGTT
TATACATCAACTCAGAGAACATCCCTGACTATTTATTTGACTTCTTTGAATACTTGCCTAATTGTGCAAG
CGCATTGGACTTCGTGAAGTTGGATTTCTATGAAAGAGCTACAGAGTCACAGGACAAGGCAGAAGAGAAT
GTCCCTGGAGTTCACACAGAAGGGCCCTCAGAAACCTACATTCCCCCCAGGGCTGTGTCTTTGTTCTTCA
ACTGGAAGCAGGAATTCAAGACTCTAGAGGTCACACTCCGAGATATTAACAAGTTGAATAAGCAAGATAT
CAAATATCTGGGGAAGATATTCAGCTCTGCCACCAACCTCCGGCTGCATATCAAGAGATGTGCAGCCATG
GCTGGAAGACTCAGCTCAGTCCTCAGAACCTGCAAGAACATGCATACCCTCATGGTGGAAGCCAGTCCCC
TCACCACGGATGACGAACAGTACATCACATCTGTGACAGGCCTCCAGAACTTAAGTATTCACCGCTTGCA
CACTCAACAGCTGCCAGGTGGTCTGATTGACAGCTTGGGTAATCTGAAGAACCTCGAGAGACTCATACTG
GATGACATCAGGATGAACGAGGAAGATGCTAAAAACCTAGCCGAAGGCCTACGAAGCCTGAAGAAGATGC
GTTTACTCCATTTGACTCATTTGTCTGACATTGGGGAGGGGATGGACTACATAGTCAAGTCTCTCTCAGA
AGAATCCTGTGATCTCCAAGAGATGAAGTTGGTGGCCTGCTGTCTGACTGCAAACTCTGTGAAAGTTCTA
GCACAGAATCTTCACAATTTGATCAAGCTGAGCATTCTTGATATATCAGAAAATTACCTGGAAAAGGATG
GGAATGAAGCTCTACAGGAACTGATCGGCAGGCTTGGCGTTCTGGGAGAGCTCACTACATTGATGCTGCC
TTGGTGCTGGGATGTGCACACCAGCCTGCCCAAGCTGTTGAAGCAGTTGGAGGGGACCCCAGGACTTGCC
AAACTTGGATTGAAAAACTGGAGACTCAGAGACGAAGAGATTAAAAGTTTAGGTGAATTTCTGGAGATGA
ATCCTCTGAGAGACTTGCAGCAGTTGGATTTAGCGGGGCACTGTGTGAGCAGTGACGGATGGCTTTACTT
CATGAATGTGTTTGAGAATCTGAAGCAGTTAGTGTTTTTTGACTTTAGCACTGAGGAGTTCTTACCGGAT
GCAGCACTGGTGAGGAAACTTAGTCAAGTGTTATCCAAGTTAACTCTTCTGCAAGAGGTAAAGCTCACGG
GCTGGGAGTTTGATGACTATGATATTAGCGCTATTAAAGGCACCTTTAAACTAGTGACTGCTTAA

Translation (1024 aa):
MNFIRNNRRALIQRMGLTVTKQICDDLFALNVLNNQEANVIYCEPLEQEAARKIIHMTMQKGSAACNLFL
KSLENWDYFVYQDLTGQNLSYQVTEEDLNVLAQNLKDLYNSPAFLNFYPLGEDIDIIFNLEKTFTEPIMW
KKDHRHHRVEQLTLGSLLEALKSPCLIEGESGKGKSTLLQRIAMLWASGGCRALKGFRLVFFIHLRSARG
GLFETLYDQLLNIPDFISKPTFKALLLKLHKEVLFLLDGYNEFHPQNCPEIEALIKENHRFKNMVIVTTT
TECLRHIRHVGALTAEVGDMTEDSAKDLIEAVLVPDQVERLWAQIQESRCLRNLMKTPLFVVITCAIQMG
RQEFQAHTQTMLFQTFYDLLIQKNSHRYRGGASGDFARSLDYCGDLALEGVFAHKFDFEPEHGSSMNEDV
LVTIGLLCKYTAQRLKPTYKFFHKSFQEYTAGRRLSSLLTSKEPEEVSKGNSYLNKMVSISDITSLYGNL
LLYTCGSSTEATRAVMRHLAMVYQHGSLQGLSVTKRPLWRQESIQSLRNTTEQDVLKAINVNSFVECGIN
LFSESMSKSDLSQEFEAFFQGKSLYINSENIPDYLFDFFEYLPNCASALDFVKLDFYERATESQDKAEEN
VPGVHTEGPSETYIPPRAVSLFFNWKQEFKTLEVTLRDINKLNKQDIKYLGKIFSSATNLRLHIKRCAAM
AGRLSSVLRTCKNMHTLMVEASPLTTDDEQYITSVTGLQNLSIHRLHTQQLPGGLIDSLGNLKNLERLIL
DDIRMNEEDAKNLAEGLRSLKKMRLLHLTHLSDIGEGMDYIVKSLSEESCDLQEMKLVACCLTANSVKVL
AQNLHNLIKLSILDISENYLEKDGNEALQELIGRLGVLGELTTLMLPWCWDVHTSLPKLLKQLEGTPGLA
KLGLKNWRLRDEEIKSLGEFLEMNPLRDLQQLDLAGHCVSSDGWLYFMNVFENLKQLVFFDFSTEEFLPD
AALVRKLSQVLSKLTLLQEVKLTGWEFDDYDISAIKGTFKLVTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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