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Report for CCDS37861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37861.1 Public Mus musculus 18 Ctif 23 108 98 CCDS HistoryNCBI Gene:269037Re-query CCDS DB by CCDS ID:37861.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165559.2 ENSMUSP00000129974.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165559.2Link to Ensembl Protein Viewer:ENSMUSP00000129974.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165559Re-query CCDS DB by Protein ID:ENSMUSP00000129974
Original member NCBI NM_201354.2 NP_958742.2 Updated not alive Link to Nucleotide Sequence:NM_201354.2Link to Protein Sequence:NP_958742.2Re-query CCDS DB by Nucleotide ID:NM_201354Re-query CCDS DB by Protein ID:NP_958742
Current member NCBI NM_201354.3 NP_958742.2 Accepted alive Link to Nucleotide Sequence:NM_201354.3Link to Protein Sequence:NP_958742.2Re-query CCDS DB by Nucleotide ID:NM_201354Re-query CCDS DB by Protein ID:NP_958742Link to BLAST:NP_958742.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958742.2 623 Q6PEE2-2 623 99.8395% 0 1

Chromosomal Locations for CCDS 37861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 75435194 75435409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75437171 75437224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75471865 75472020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75519739 75520107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75521377 75521869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75565004 75565080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75605628 75605703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75610669 75610773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75611706 75611779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75624229 75624300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75637133 75637312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGAGAACTCCTCAGCAGCTTCAGCCTCCTCTGAGGCAGGAAGCAGCCGCTCCCAGGAGATCGAGGAGC
TGGAGCGCTTCATTGACAGCTACGTGCTGGAGTACCAGGTGCAGGGGCTGCTGACCGACAAGACAGAGGG
TGACGGCGAGAGCCAGAGGACACAGTCCCATATCTCCCAGTGGACGGCTGACTGCAGAGAGCAGCTGGAT
GGTAGCTGTTCCTTCTCCAGAGGGCGAGCCCCGCCACAGCAGAATGGCAACAAGGACAACTCCCTGGACA
TGCTGGGCACAGATATCTGGGCCGCCAATACCTTTGATTCCTTCAGTGGTGCCACCTGGGACCTGCAGCC
TGAAAAGCTGGACTTCACCCAGTTCCATCGGAAGGTCCGCCACACACCCAAGCAGCCCCTGCCACACATC
GACAGAGAAGGGTGTGGAAAGGGAAAGCTGGAAGATGGAGATGGTATCAGCCTGAATGACATTGAGAAGG
TCCTCCCGACCTGGCAGGGCTACCATCCGATGCCCCACGAAGCAGAGATTGCACATACCAAGAAGTTGTT
CCGAAGGAGGAGAAATGACCGAAGACGGCAGCAAAGACCTCCAGGAGGGAACAAGCCCCAACAGCATGGT
GACCATCAGCCAGGCAGTGCCAAACACAACAGGGACCACCAGAAATCTTACCAGGGGGGCTCAGGGCCCC
ACCCCTCAGGGAGGCCCACACACCATGGCTACAGCCAGAACCGACGCTGGCATCACGGCAACATGAAACA
TCCACCGGGAGACAAGGGAGAAGCGGGCAGCCACCGCAACGCCAAAGAGACCGTGACCGTTGAGAACCCC
AAACTTGAAGACGGCCCAGGGGACACCGGACACAGTGGCCTTGAGCCCCCCTGCAGCCCTGACACTCTGA
CCCCAGCAGCTTCCGAGAGACCAACCCCTCAGCTGCCAGGGGGGCCGGAGGCTGAGATAAAGCATAAAGA
CACTGTTCTTCCTGAGCGTCTCAGGGAGCGGCCCAAAATCACCCTGCTCCAGTCTTCCAAAGACAGGCTG
AGGCGAAGGCTGAAGGAAAAGGACCGGGACATCCCGAATCCCACTGAGACTTCAGCTCCACTGAGGTGTG
TTTTATGTGTCCCCCATGTCCCCCAGGACGAAGTGGCAGTAGAGACAAGCAGCCCTCAGCCAAGCAAGAT
GGACAGGCTGATGGAAATCCTTAACAGCATGAGAAATAACAGCAGCGACGTGGATGCCAAGCTCACCTCC
TTCATGGAGGAGGCGCAGAACTCCACCAACTCTGAGGAGATGCTGGGGGAGATCGTGCGGACCATCTACC
AGAAGGCCGTGTCAGACCGCAGCTTCGCCTTCACGGCCGCCAAGCTCTGCGACAAGATGGCCCTCTTCAT
GGTCGAGGGGACCAAGTTCCGGAGCCTGCTCCTCAACATGCTCCAGAAGGACTTCACTGTGCGGGAGGAG
CTGCAGCAACAGGATGTGGAGCGCTGGCTGGGCTTCATCACCTTCCTGTGTGAGGTGTTCGGCACCATGC
GGAGCAGCACTGGCGAGCCCTTCCGAGTGCTGGTGTGCCCCATCTACACGTGCCTCCGGGAGCTCTTGCA
GTCACAGGATGTGAAGGAAGACGCAGTCCTCTGCTGTTCTATGGAGCTACAAAGCACAGGCCGGCTGCTA
GAGGAGCAGCTGCCAGAGATGATGACGGAGCTCCTAGCCAGCGCAAGAGATAAGATGCTGTGCCCCTCAG
AGTCCATGCTAACCCGGTCCCTGCTCCTGGAGGTCATCGAGCTCCACGCCAACAGCTGGAACCCTCTGAC
GCCCCCCATCACGCAGTACTACAACAGGACCATCCAGAAACTGACAGCCTGA

Translation (623 aa):
MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLTDKTEGDGESQRTQSHISQWTADCREQLD
GSCSFSRGRAPPQQNGNKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKLDFTQFHRKVRHTPKQPLPHI
DREGCGKGKLEDGDGISLNDIEKVLPTWQGYHPMPHEAEIAHTKKLFRRRRNDRRRQQRPPGGNKPQQHG
DHQPGSAKHNRDHQKSYQGGSGPHPSGRPTHHGYSQNRRWHHGNMKHPPGDKGEAGSHRNAKETVTVENP
KLEDGPGDTGHSGLEPPCSPDTLTPAASERPTPQLPGGPEAEIKHKDTVLPERLRERPKITLLQSSKDRL
RRRLKEKDRDIPNPTETSAPLRCVLCVPHVPQDEVAVETSSPQPSKMDRLMEILNSMRNNSSDVDAKLTS
FMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREE
LQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLL
EEQLPEMMTELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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