NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23430.1 Public Mus musculus 9 Foxl2 23 108 98 CCDS HistoryNCBI Gene:26927Re-query CCDS DB by CCDS ID:23430.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051312.4 ENSMUSP00000053297.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051312.4Link to Ensembl Protein Viewer:ENSMUSP00000053297.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051312Re-query CCDS DB by Protein ID:ENSMUSP00000053297
Original member NCBI NM_012020.2 NP_036150.1 Updated not alive Link to Nucleotide Sequence:NM_012020.2Link to Protein Sequence:NP_036150.1Re-query CCDS DB by Nucleotide ID:NM_012020Re-query CCDS DB by Protein ID:NP_036150
Current member NCBI NM_012020.3 NP_036150.1 Accepted alive Link to Nucleotide Sequence:NM_012020.3Link to Protein Sequence:NP_036150.1Re-query CCDS DB by Nucleotide ID:NM_012020Re-query CCDS DB by Protein ID:NP_036150Link to BLAST:NP_036150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036150.1 375 O88470 375 100% 0 0

Chromosomal Locations for CCDS 23430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98955661 98956788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGATGGCCAGCTACCCCGAGCCCGAAGACACGGCGGGGACCCTGCTGGCTCCGGAGAGCGGACGCGCAG
TCAAAGAGGCCGAGGCGTCGCCGCCGAGTCCCGGCAAGGGAGGCGGGACAACACCGGAGAAACCAGACCC
CGCGCAGAAGCCCCCGTACTCGTACGTGGCGCTCATCGCCATGGCGATCCGCGAGAGCGCCGAGAAGAGG
CTCACTCTGTCCGGCATCTACCAGTACATCATAGCCAAGTTCCCGTTCTACGAGAAGAACAAGAAGGGCT
GGCAGAATAGCATCCGCCACAACCTCAGCCTCAACGAGTGCTTCATCAAGGTGCCGCGCGAGGGCGGCGG
CGAGCGCAAGGGCAACTACTGGACGCTCGACCCGGCCTGCGAGGACATGTTCGAGAAGGGCAACTACCGG
CGCCGCCGCCGCATGAAGCGGCCCTTCCGGCCGCCGCCCGCTCACTTCCAGCCCGGCAAGGGGCTCTTCG
GGAGCGGAGGAGCGGCGGGTGGCTGCGGCGTGCCCGGAGCTGGGGCCGATGGCTATGGCTACCTGGCGCC
ACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCCTGGCCCCTGCCGCAGCCTCCCTCGCCCATGCCC
TACGCCTCCTGCCAGATGGCGGCGGCTGCGGCGGCCGCTGCTGCAGCCGCTGCAGCCGCCGGCCCGGGCA
GCCCCGGTGCAGCCGCGGTGGTCAAGGGGCTGGCGGGCCCCGCCGCCTCCTACGGGCCGTACTCGCGCGT
GCAGAGCATGGCGCTGCCTCCGGGCGTCGTGAACTCCTACAACGGCCTGGGGGGCCCTCCTGCCGCACCA
CCGCCGCCGCCACCGCCGCCGCACCCTCACCCGCACCCTCACGCACATCATCTGCACGCGGCCGCTGCGC
CCCCGCCAGCCCCGCCACACCACGGGGCTGCCGCGCCTCCCCCGGGTCAGCTCAGTCCCGCCAGCCCGGC
CACCGCCGCGCCCCCGGCACCCGCGCCCACGAGCGCGCCCGGCCTGCAGTTCGCCTGCGCCCGGCAACCC
GAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGCGCTGCACTCGCGTCTGG
ATCTCTGA

Translation (375 aa):
MMASYPEPEDTAGTLLAPESGRAVKEAEASPPSPGKGGGTTPEKPDPAQKPPYSYVALIAMAIRESAEKR
LTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNYR
RRRRMKRPFRPPPAHFQPGKGLFGSGGAAGGCGVPGAGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMP
YASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYSRVQSMALPPGVVNSYNGLGGPPAAP
PPPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQP
ELAMMHCSYWDHDSKTGALHSRLDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH