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Report for CCDS28244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28244.1 Public Mus musculus 16 Or5h23 23 108 98 CCDS HistoryNCBI Gene:258035Re-query CCDS DB by CCDS ID:28244.1Re-query CCDS DB by GeneID:258035See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078517.1 ENSMUSP00000077604.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078517.1Link to Ensembl Protein Viewer:ENSMUSP00000077604.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000078517Re-query CCDS DB by Protein ID:ENSMUSP00000077604
Original member Current member EBI ENSMUST00000215647.1 ENSMUSP00000150473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215647.1Link to Ensembl Protein Viewer:ENSMUSP00000150473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215647Re-query CCDS DB by Protein ID:ENSMUSP00000150473
Original member Current member NCBI NM_001011807.2 NP_001011807.2 Accepted alive Link to Nucleotide Sequence:NM_001011807.2Link to Protein Sequence:NP_001011807.2Re-query CCDS DB by Nucleotide ID:NM_001011807Re-query CCDS DB by Protein ID:NP_001011807Link to BLAST:NP_001011807.2

Chromosomal Locations for CCDS 28244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59085552 59086481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAAACGGACAACACAACACTGCTCATTCAGTTTGTTCTCTCAGGACTTGTTCATCTGCCCCAGTGGA
AAATCCCCCTGTTCCTGCTGTTTTTGGTCATTTATCTCATCACCATTGTGGGCAACCTTGGTCTGATCAT
TCTCATCTGGAATGACCCTCACCTTCACATTCCTATGTACTTATTTCTTGGATGTTTAGCTTTTGTGGAT
ACTTGGTTATCATCCACAGTGACACCAAAGATGCTACAAGACATTTTTTCCAAGAGTAAACTGATCTCTT
TCTCTGAATGCATGATACAGTTTTTTTCATTTGTAGTGAGTGCAACCACGGAATGTTTTCTCTTGGCAGC
AATGGCCTATGATCGCTATGTAGCCATATGCAAACCTTTACTCTACCCAGTGATCATGACAAATAGACTT
TGTGTAAGTCTTTTAACATTGTCCTTTTTAGGTGGATTCATTCATGCTTTAATTCACGAAGGCTTTTTAT
TCAGATTAATTTTCTGTAGGTCTCACATAATAAACCATTTTTATTGTGATGTTATGCCACTGTTAAAGAT
TTCCTGTAATGACCCTTCTATCAATTACCTGATGCTCTTTATTTTCTCTGGCTCAATTCAGGTCTTCACA
ATTACAACTATCCTTGTCTCTTATACACTTGTTCTGTTTTCTATCCTAAAGAAGAAATCTCTCAAAAGCA
TAAAGAAAGCCTTTTCCACCTGTGGAGCCCATCTCCTCTCTGTTTCTTTGTACTATGGCCCTCTGCTCTT
CATGTATGTGCGCCCTGCATCTCCACAAGTAAATGATGAAGATATGATGGACTCTGTATTTTACACCATC
ATAATTCCTGTACTGAACCCAATTATCTACAGTCTGAGGAATGAGCAAGTAAAAAAATCACTGGCAAAAT
GTTTAAGGAGAAATACTTAG

Translation (309 aa):
METDNTTLLIQFVLSGLVHLPQWKIPLFLLFLVIYLITIVGNLGLIILIWNDPHLHIPMYLFLGCLAFVD
TWLSSTVTPKMLQDIFSKSKLISFSECMIQFFSFVVSATTECFLLAAMAYDRYVAICKPLLYPVIMTNRL
CVSLLTLSFLGGFIHALIHEGFLFRLIFCRSHIINHFYCDVMPLLKISCNDPSINYLMLFIFSGSIQVFT
ITTILVSYTLVLFSILKKKSLKSIKKAFSTCGAHLLSVSLYYGPLLFMYVRPASPQVNDEDMMDSVFYTI
IIPVLNPIIYSLRNEQVKKSLAKCLRRNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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