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Report for CCDS38422.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38422.2 Public Mus musculus 3 Abhd18 23 108 98 CCDS HistoryNCBI Gene:269423Re-query CCDS DB by CCDS ID:38422.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 38422.1
The coding region has been updated to represent a splice variant that encodes a longer protein and is more supported by available conservation and transcript data. This version differs from the previous one in the presence/absence of several frameshifting exons and a frameshifting alternate splice junction.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 38422.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108077.9 ENSMUSP00000103712.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108077.9Link to Ensembl Protein Viewer:ENSMUSP00000103712.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108077Re-query CCDS DB by Protein ID:ENSMUSP00000103712
Original member Current member EBI ENSMUST00000108078.8 ENSMUSP00000103713.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108078.8Link to Ensembl Protein Viewer:ENSMUSP00000103713.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108078Re-query CCDS DB by Protein ID:ENSMUSP00000103713
Original member NCBI NM_026622.3 NP_080898.2 Updated not alive Link to Nucleotide Sequence:NM_026622.3Link to Protein Sequence:NP_080898.2Re-query CCDS DB by Nucleotide ID:NM_026622Re-query CCDS DB by Protein ID:NP_080898
Current member NCBI NM_026622.4 NP_080898.2 Accepted alive Link to Nucleotide Sequence:NM_026622.4Link to Protein Sequence:NP_080898.2Re-query CCDS DB by Nucleotide ID:NM_026622Re-query CCDS DB by Protein ID:NP_080898Link to BLAST:NP_080898.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080898.2 464 Q8C1A9-1 464 100% 0 0

Chromosomal Locations for CCDS 38422.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40904902 40904993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40905872 40905956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40910503 40910603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40916686 40916764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40916872 40916956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40919378 40919405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40923413 40923551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40930137 40930226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40930881 40930982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40933524 40933902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40934867 40935029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40935342 40935393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGGTGTAAGCAAGTTAGATATTCTATACCGGAGACTTCTTCTCACAAAACTTTTCATCAGAGGATGGG
GAAGGCCAGAAGACCTCAAGAGACTCTTTGAATTCAGAAAGATGATTGGAAATCGAGAAAGGTGCCAGAA
CCTGGTTTCAAGTGACTACCCGGTACACATCGATAAGGTTGAAGAACAGTCAGATTGTAAGATCCTAGAT
GGACACTTTGTTTCTCCCATGGCCCACTATGTGCCTGGTATCATGCCAATTGAATCTGTTGTTGCAAGAT
TCCAGTTTATCGTGCCTAAGGAATGGAACAGCAGGTACCGACCTGTGTGCATTCATCTGGCTGGAACAGG
AGACCATCATTACTGGAGGCGCAGAACACTCATGGCTCGTCCTATGATTAAGGAGGCCAGGATGGCTTCA
TTGTTGTTAGAAAACCCTTATTATGGCTGCAGGAAGCCCAAGGACCAAGTAAGATCCAGCTTAAAAAATG
TGTCAGACCTATTTGTGATGGGAGGCGCTCTTATTCTTGAGTCTGCAGCTCTCTTGCACTGGCTGGAGAG
GGAAGGTTATGGACCTCTTGGGATGACTGGAATATCCATGGGAGGACATATGGCCTCCTTAGCAGTGTCC
AACTGGCCCAAGCCCATGCCGTTGATTCCATGCCTGTCTTGGTCCACAGCATCTGGGGTCTTCACTACGG
GTGTATTGAGTAAATCAATTAATTGGCGGGAGCTCGAAAAGCAGTATTATACACAGACAGTTTATGAAGA
AGAAATTATTCATATGCTTGAATACTGTGGGACAGATTCTTTCAAAATGGGACACGAGTTCATGAATCAC
TTGCCTAGCAATGCAGACAAGCTGACTAACCTGAATCTGGTTTCCAGAACTTTAAATTTAGATATGACAG
ACCAAGTTGTATCCCCAAAGGATGCCAAGTGCCATAAGTCTGGTAAAACATCTATCAGTGCTCCTTCAAA
TGGACAGCTGTTGCAAGATACAGCTAAGATGGAATGCTTGAATCAAACGCTCTCGACTAACAAAAGTTGG
TTTGCAAGTTACAACCCTCAGTCATTTCACCTGCTCAATAGAGAACAAAGAAGAAGCAATCGTCAAAAAG
AATCTTTAATATTCATGAAAGGAGTCATGGATGAATGTACTCACGTAGCAAACTTCTCAGTTCCAGTTGA
TCCAAGCCTCATTATAGTGGTACAAGCCAAAGAGGATGCCTATATTCCACGAACAGGAGTTCGAAGCTTG
CAAGAAATTTGGCCTGGTTGTGAAATCCGGTATCTAGAAGGGGGTCATATCAGTGCTTATCTCTTTAAAC
AAGGACTCTTCAGACAAGCCATCTACGATGCCTTTGAACGTTTCCTTCATAAATATGCTAACTAA

Translation (464 aa):
MGVSKLDILYRRLLLTKLFIRGWGRPEDLKRLFEFRKMIGNRERCQNLVSSDYPVHIDKVEEQSDCKILD
GHFVSPMAHYVPGIMPIESVVARFQFIVPKEWNSRYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMAS
LLLENPYYGCRKPKDQVRSSLKNVSDLFVMGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVS
NWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGTDSFKMGHEFMNH
LPSNADKLTNLNLVSRTLNLDMTDQVVSPKDAKCHKSGKTSISAPSNGQLLQDTAKMECLNQTLSTNKSW
FASYNPQSFHLLNREQRRSNRQKESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSL
QEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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