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Report for CCDS30308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30308.1 Public Mus musculus X Tex11 23 108 98 CCDS HistoryNCBI Gene:83558Re-query CCDS DB by CCDS ID:30308.1Re-query CCDS DB by GeneID:83558See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009814.9 ENSMUSP00000009814.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009814.9Link to Ensembl Protein Viewer:ENSMUSP00000009814.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000009814Re-query CCDS DB by Protein ID:ENSMUSP00000009814
Original member Current member NCBI NM_031384.2 NP_113561.2 Accepted alive Link to Nucleotide Sequence:NM_031384.2Link to Protein Sequence:NP_113561.2Re-query CCDS DB by Nucleotide ID:NM_031384Re-query CCDS DB by Protein ID:NP_113561Link to BLAST:NP_113561.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113561.2 947 Q14AT2-1 947 100% 0 0

Chromosomal Locations for CCDS 30308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100838905 100839060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100839701 100839865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100849049 100849169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100850269 100850377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100851826 100851975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100876536 100876608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100879977 100880093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100882244 100882314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100882923 100883009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100884362 100884402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100903758 100903814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100906119 100906204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100916526 100916650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100933388 100933490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100946656 100946793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100951565 100951650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100954700 100954851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100972094 100972172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100975180 100975261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100977624 100977719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100985693 100985747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101007703 101007788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101015544 101015624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101032498 101032617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101032701 101032781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101039047 101039126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101043441 101043525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101050459 101050580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101059356 101059395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2844 nt):
ATGGACCGCATTACTGACTTTTACTTCTTGGACTTCAGAGAATCTGTTAAAACCCTGATCATAACTGGTA
ATTCATGGAGACTACAAGAAATGATTGACAGATTCTTCACAAACATATCAAATTTCAACAGAGAGTCTCT
GACTGAAATACAGAATATTCAGATTGAAGAAATTGCAGTGAACCTGTGGAACTGGGCAGTTACTAAGAGA
GTAGAACTGTCTGTGAGGAAAAACCAGGCAGCTAAACTGTGTTATATTGCTTGCAAGCTGGTATATATGC
ATGGAATCTCAGTCTCTTCAGAAGAAGCTATTCAAAGACAGATTTTGATGAATATAAAAACAGGAAAAGA
GTGGTTGTATACTGGAAATGCTCAGATTGCTGATGAATTTTTTCAAGCTGCCATGACTGATCTGGAGAGA
TTATATGTCAGATTAATGCAGAGCTGCTACACCGAGGCCAACGTGTGTGTGTATAAGATGATTGTTGAGA
AAGGCATCTTCCATGTGCTTTCTTACCAAGCTGAGTCAGCTGTTGCTCAAGGGGATTTCAAGAAAGCATC
TATGTGCGTCTTACGTTGCAAAGATATGCTGATGAGACTCCCTAACATGACAAAATATCTTCATGTACTC
TGTTACAACCTTGGCATAGAAGCAAGCAAGCGGAATAAATACAAAGAGAGTTCATTCTGGCTTGGCCAAA
GCTATGAAATTGGGAAGATGGATAGGCGTTCTGTTGAGCCACAAATGCTGGCTAAAACGCTGCGGTTACT
AGCCACTATTTATTTGAATTGTGGTGGCGAAGCATATTATACCAAGGCCTTCATTGCTATACTCATTGCA
AACAAGGAACATTTACATCCAGCTGGGCTTTTCTTAAAGATGAGGATCCTCATGAAAGGCAACTCATGTA
ATGAAGAACTCCTTGAAGCTGCTAAGGAAATACTATATCTTGCTATGCCTTTGGAATTCTATCTGAGCAT
TATTCAATTCCTGATAGATAATAAAAGAGAGTCTGTTGGGTTTCGCTTTCTGAGAATCATCTCTGACAAT
TTTAAGTCGCCAGAAGATAGGAAGAGAATTCTGTTGTTCTACATTGACACGCTTTTACAAAAGGATCAAG
ACATGATTGCTGAAGAGAAGATTAAAGACGTCCTTAAAGGTTACCAAACAAGAAGTCGACTGTCAAGAGA
TTTGGTAAATTGGTTACACAACATTCTGTGGGGAAAGGCTTCCAGAAGTGTTAAGGTCCAAAAATATGCT
GATGCCCTACACTGGTACAGTTATTCTCTGAAGTTGTATGAGTATGATAAAGCAGATCTGGATTTGATCA
AGCTGAAGAGGAACATGGTTTCCTGTTACTTATCTTTGAAACAACTTGATAAGGCTAAAGAGGCCATAGC
AGAAGTTGAGCAAAAGGATCCTACACATGTTTTCACTCGGTATTATATATTCAAGATCGCAATCATGGAG
GGTGATGCTTTCAGAGCTTTACAGGTGGTCAGTGCTTTAAAGAAATCATTAATGGATGGAGAATCAGAAG
ATCGTGGACTAATTGAAGCTGGAGTTTCAACTCTCACAATCCTAAGTTTATCTATAGATTTTGCTCTAGA
GAATGGACAGCAATTTGTGGCAGAAAGAGCTTTGGAATATTTATGTCAACTTTCAAAAGACCCAAAAGAA
GTACTTGGAGGTTTAAAGTGTCTCATGCGGATTATTCTTCCACAAGCTTTTCATATGCCAGAATCTGAAT
ATAAAAAGAAAGAAATGGGTAGACTTTGGAACTACTTGAATACAGCACTCCTGAAATTTTCTGAATATTT
TAATGAAGCTCCCTCAACTTTGGATTATATGGTTAATGATGCCAATTGGTTCAGGAAAATAGCTTGGAAC
TTAGCTGTGCAATCTGAGAAGGATCTAGAGGCAATGAAAAACTTTTTCATGGTTTCTTATAAGCTGTCCC
TTTTTTGTCCTTTGGATCAAGGACTACTGATTGCACAGAAAACGTGTTTACTTGTAGCAGCTGCAGTTGA
TCTGGATAGAGGAAGAAAAGCTCCAACAATTTGTGAGCAGAACATGTTACTAAGAACAGCACTTGAGCAG
ATAAAGAAATGCAAAAAAGTTTGGAATCTCCTGAAAAAAACAGGGGACTTCTCAGGTGATGACTGTGGGG
TATTGCTTCTGCTCTATGAATTTGAAGTTAAAACCAAAACGAATGATCCATCACTGAGCAGATTTGTGGA
TTCAGTTTGGAAGATGCCTGATTTAGAATGCAGAACACTTGAAACAATGGCATTACTAGCTATGGATAAA
CCTGCATACTATCCTACTATTGCACATAAGGCCATGAAAAAACTTTTATTGATGTACAGAAAACAGGAGC
CAGTTGATGTTTTAAAATACAGCGTATGCATGCACAACTTGATTAAACTTCTGGTGGCAGATGAAGTATG
GAATATATCGCTGTATCCCCTAAAAGAAGTTCAGAGCCATTTTAAAAATACTCTGAGCATCATTCGCCAA
AACGAAGGATACCCAGAAGAGGAGATTGTATGGCTAATGATCAAGTCTTGGAATATTGGAATACTGATGT
CTAGCAAGAACAAGTATATATCTGCAGAAAGGTGGGCTGCAATGGCATTGGATTTCCTTGGCCACCTTAG
CACCCTCAAAACAAGCTATGAAGCAAAGGTGAATCTTCTGTATGCCAACCTCATGGAAATATTAGATAAA
AAGACGGATTTAAGATCTACAGAGATGACTGAACAATTAAGAGCACTTATTGTTCCTCCGGAGGATCAAG
GTTCAGTTTCCAGCACCAACGTGGCAGCTCAAAACCATCTGTAA

Translation (947 aa):
MDRITDFYFLDFRESVKTLIITGNSWRLQEMIDRFFTNISNFNRESLTEIQNIQIEEIAVNLWNWAVTKR
VELSVRKNQAAKLCYIACKLVYMHGISVSSEEAIQRQILMNIKTGKEWLYTGNAQIADEFFQAAMTDLER
LYVRLMQSCYTEANVCVYKMIVEKGIFHVLSYQAESAVAQGDFKKASMCVLRCKDMLMRLPNMTKYLHVL
CYNLGIEASKRNKYKESSFWLGQSYEIGKMDRRSVEPQMLAKTLRLLATIYLNCGGEAYYTKAFIAILIA
NKEHLHPAGLFLKMRILMKGNSCNEELLEAAKEILYLAMPLEFYLSIIQFLIDNKRESVGFRFLRIISDN
FKSPEDRKRILLFYIDTLLQKDQDMIAEEKIKDVLKGYQTRSRLSRDLVNWLHNILWGKASRSVKVQKYA
DALHWYSYSLKLYEYDKADLDLIKLKRNMVSCYLSLKQLDKAKEAIAEVEQKDPTHVFTRYYIFKIAIME
GDAFRALQVVSALKKSLMDGESEDRGLIEAGVSTLTILSLSIDFALENGQQFVAERALEYLCQLSKDPKE
VLGGLKCLMRIILPQAFHMPESEYKKKEMGRLWNYLNTALLKFSEYFNEAPSTLDYMVNDANWFRKIAWN
LAVQSEKDLEAMKNFFMVSYKLSLFCPLDQGLLIAQKTCLLVAAAVDLDRGRKAPTICEQNMLLRTALEQ
IKKCKKVWNLLKKTGDFSGDDCGVLLLLYEFEVKTKTNDPSLSRFVDSVWKMPDLECRTLETMALLAMDK
PAYYPTIAHKAMKKLLLMYRKQEPVDVLKYSVCMHNLIKLLVADEVWNISLYPLKEVQSHFKNTLSIIRQ
NEGYPEEEIVWLMIKSWNIGILMSSKNKYISAERWAAMALDFLGHLSTLKTSYEAKVNLLYANLMEILDK
KTDLRSTEMTEQLRALIVPPEDQGSVSSTNVAAQNHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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