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Report for CCDS30259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30259.1 Public Mus musculus X Samt3 23 108 98 CCDS HistoryNCBI Gene:73495Re-query CCDS DB by CCDS ID:30259.1Re-query CCDS DB by GeneID:73495See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047945.1 ENSMUSP00000036724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047945.1Link to Ensembl Protein Viewer:ENSMUSP00000036724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000047945Re-query CCDS DB by Protein ID:ENSMUSP00000036724
Original member Current member NCBI NM_028554.3 NP_082830.2 Accepted alive Link to Nucleotide Sequence:NM_028554.3Link to Protein Sequence:NP_082830.2Re-query CCDS DB by Nucleotide ID:NM_028554Re-query CCDS DB by Protein ID:NP_082830Link to BLAST:NP_082830.2

Chromosomal Locations for CCDS 30259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 86044777 86044805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86046533 86047205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGAATTTCCTCACCTGCGATATACAAAGATTTGCTGTGTCAAAGGAATATATCTTCAGACTGAGTGGAC
TCATTTGCAGCCTAACAGCTGTGGTGTTTGAAATAATCCTTGCAAACAGCCGATGCTGGCGCCTATGGGA
ATTTGACGATAAGACTGTACAGTTCGTGTTTTTTGGACTCTGGGAAGCTTATTACCATCAAGTGTTTAAC
ATCTCTGGATCTACCACCCGGACTCTGGTGCACAGCCCTATCAACTCTACATGGACTATTTCACCTGAAT
TCCACTATGCACAGACATTGATAGTATGGGCGATTTTGTTGAAACCTGTAGTCCTACTTTTTAATGCAAT
GGCCGTTAAGATAGACTACACGAATGACTCGTTTGTTAAGGGACAGATGCTTTTGTACAAGATCTCTGCC
TCACTTTTGTGTATTAGCAGCCTTTGCACATTTGTTTCCGTGAGCTGGAACCATGTTGTAGACCTTTACG
GCCAAACCACACTTGATTTTCCACCCAGCTTTCCTGTTAAGAAAAAGGATCTTAAAATGAAACACTATAC
TGCTGCATTCCCAATAGGGGTCCTGACAGCTACCATGTCACTCTTTGGTGTGATTATATTCCTCTTTGAG
ATGAGCTCTTTGGATCCACAGAGTGAAGTGGAGGCCCAGTGTGCTTCCAGACTGATCAATCAAAAGACAT
GA

Translation (233 aa):
MNFLTCDIQRFAVSKEYIFRLSGLICSLTAVVFEIILANSRCWRLWEFDDKTVQFVFFGLWEAYYHQVFN
ISGSTTRTLVHSPINSTWTISPEFHYAQTLIVWAILLKPVVLLFNAMAVKIDYTNDSFVKGQMLLYKISA
SLLCISSLCTFVSVSWNHVVDLYGQTTLDFPPSFPVKKKDLKMKHYTAAFPIGVLTATMSLFGVIIFLFE
MSSLDPQSEVEAQCASRLINQKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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