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Report for CCDS39356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39356.1 Public Mus musculus 5 Snx8 23 108 98 CCDS HistoryNCBI Gene:231834Re-query CCDS DB by CCDS ID:39356.1Re-query CCDS DB by GeneID:231834See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031539.11 ENSMUSP00000031539.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031539.11Link to Ensembl Protein Viewer:ENSMUSP00000031539.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031539Re-query CCDS DB by Protein ID:ENSMUSP00000031539
Original member Current member NCBI NM_172277.3 NP_758481.1 Accepted alive Link to Nucleotide Sequence:NM_172277.3Link to Protein Sequence:NP_758481.1Re-query CCDS DB by Nucleotide ID:NM_172277Re-query CCDS DB by Protein ID:NP_758481Link to BLAST:NP_758481.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758481.1 459 Q8CFD4 459 100% 0 0

Chromosomal Locations for CCDS 39356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140341529 140341642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140344286 140344435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140344709 140344855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140346277 140346345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140352133 140352265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140353035 140353195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140353433 140353513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140355960 140356081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140358057 140358174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140360192 140360382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140389148 140389241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGACTGGCCGCGCGATGGACCCGCTGCCCTCGCCGGCAGTCGCTGCAGCTGCTGAGGCGGAGGCTGACG
AGGAGGCGGATCCGCCGGCGACAGGCCCACGAACATCCCAGGTCACTGAGTGGAGGGCCCTGGACCCCGG
GCGAATGCAGATGCCGCAGGGGAACCCACTGCTGCTGTCCTACACCCTGCAGGAGCTGCTGGCCAAGGAC
ACGGTGCAGGTGGAGCTCATCCCTGAGAAGAAGGGCCTCTTCCTTAAGCATGTGGAGTACGAGGTTTCCA
GCCAGCGCTTCAAGTCCTCCGTGTACAGACGCTACAATGACTTCGTGGTCTTCCATGAAGTGCTGCTTCA
CAAGTTCCCGTACCGCATGGTTCCAGCTCTTCCGCCCAAGAGAGTGCTGGGAGCCGACAGGGAGTTCATC
GAGGGCCGCCGGAGGGCCCTGAAGCGCTTCATCAACCTGGTGGCCCGGCACCCACCCTTCTCTGAGGACG
TGCTCCTTAAACTCTTCCTCTCCTTCAGTGGCTCGGATGTTCAGCACAAGCTCAAGGAGGCGGCCCAGTG
CGTGGGAGATGAGTTCATGAACTGTAAGCTGGCTGCTAGGGCCAAGGACTTCCTCCCAGCTGACATCCAG
ACTCAATTTGCCATGAGCCGGGAGCTGATTCGAAATGTCTACAACAGCTTCTACAAGCTTCGAGACAGAG
CCGAGCGGATTGCGTCCCGGGCCATTGACAACGCTGCTGATCTTCTCATATTTGGAAAGGAGCTTAGTGC
TTTGGGCTCCGACACCACCCCTCTGCCCTCCTGGGCTGCTCTGCACCTCAGCACATGGGGCTCCCTGAAG
CAAGCGCTCAAGGGCCTCTCCGTGGAGTTTGCACTGCTGGCGGACAGAGCTGCACAGCAGGGCAAGAAGG
AGGAGAATGATGTAGTGGAGAAGCTGAACCTCTTCTTGGATTTGTTGCAGTCCTACAAAGACCTGTGTGA
GCGGCACGAGAAGGGCGTGCTTCACAAACACCAGCGGGCACTGCACAAGTACGGCCTGATGAAGAGGCAG
ATGATGAGTGCAGCGCACGGCCGAGAACCTGAGTCTGTGGAGCAGCTGGAGTCACGAATCGTGGAGCAGG
AGAACGTGATCCAGACTATGGAACTCCGAAACTACTTCTCCCTCTACTGCCTGCACCAGGAGACGCAGCT
CGTCCACGTCTACCTGCCTCTCACCTCGCACATCCTGGGGGCCTTCGTGAACTCCCAGATCCAAGGGCAC
AAGGAGATGAGCAAGGTGTGGAATGACCTGAAGCCGAAGCTGAGCTGCCTCTTCGCTGGACCTCACAGTG
TGTTGACGCCACCGCGCTCCCCGCAGGAGGATGGCGTGTGTCCCCACTAG

Translation (459 aa):
MTGRAMDPLPSPAVAAAAEAEADEEADPPATGPRTSQVTEWRALDPGRMQMPQGNPLLLSYTLQELLAKD
TVQVELIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFHEVLLHKFPYRMVPALPPKRVLGADREFI
EGRRRALKRFINLVARHPPFSEDVLLKLFLSFSGSDVQHKLKEAAQCVGDEFMNCKLAARAKDFLPADIQ
TQFAMSRELIRNVYNSFYKLRDRAERIASRAIDNAADLLIFGKELSALGSDTTPLPSWAALHLSTWGSLK
QALKGLSVEFALLADRAAQQGKKEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYGLMKRQ
MMSAAHGREPESVEQLESRIVEQENVIQTMELRNYFSLYCLHQETQLVHVYLPLTSHILGAFVNSQIQGH
KEMSKVWNDLKPKLSCLFAGPHSVLTPPRSPQEDGVCPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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