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Report for CCDS52210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52210.1 Public Mus musculus 7 Vmn2r57 23 108 98 CCDS HistoryNCBI Gene:269902Re-query CCDS DB by CCDS ID:52210.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165029.2 ENSMUSP00000125817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165029.2Link to Ensembl Protein Viewer:ENSMUSP00000125817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165029Re-query CCDS DB by Protein ID:ENSMUSP00000125817
Original member Current member NCBI NM_177764.4 NP_808432.2 Accepted alive Link to Nucleotide Sequence:NM_177764.4Link to Protein Sequence:NP_808432.2Re-query CCDS DB by Nucleotide ID:NM_177764Re-query CCDS DB by Protein ID:NP_808432Link to BLAST:NP_808432.2

Chromosomal Locations for CCDS 52210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41399732 41400663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41424978 41425101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41426551 41426778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41427433 41428239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41428532 41428823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41448433 41448641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGTTCTGGATTTTTATCTTTGGAGTTTTGTATATTCCCAATTTTGTATGTGCCTTTACTGGATATATGT
GCTATGAAACAATCGAGGAATATACTTACCATGAAGGAGATTTGACAATTGGTGCATTTTTTCCTCTTCA
TATTTACAGCACACGTAACCATGTTCCACATGAATTGGACCCATACTACTTCCAGGATATGTACCTAGAG
TATAATTTTATGAACTACCAGTTTCTTCTGGCCCTGATGTTTACCATTCAGGAGATCAACAGAAATCCTC
ATCTTCTACCGAACACAACTCTTGGATTTGAGCATCATAACATTAAATTTTCTGAAAAGAATATTCTTCT
TGGTCCCTTTCTTTGGCTCTCAGGGTTGAGTAATCAACTAGTTAATTATAACTGTGGCCAGAAGAGAAAT
TTACCTGCAGCACTTACAGGAACATCATGGGCAATATCTGCCCATATTGGGACACTGCTACAACTCTACA
AAATACCACAGTTTACTTTTGGACATTTTGATTCTAACATGAATGACCAAAGTCAGTATAAAACACTCTT
TCAGGTGGCCCCCGAGGACACATATCTGTCACTGGCCTTAGTGTCTTTGATGCTTTATTTCAGCTGGTCC
TGGGTGGGTCTGATTGTCCCAAATGACCCCAGAGGGACTCAGATTCTGTCAGACTTTAGAGAAGTTATGG
AAAGTAATAGGATCTGCTTAGCCTTTGTGAAAATGATTCCTGGCACCTGGAATTCATATTCTGATGCAAT
ATGGAAAAATATGGAGAAGATTCAGGAATCATCAGCAAATGTGATTATTATTTATGGGGACACTGTTTCT
TTACAAGGTTTAATGCGACACATTGCACAACTGTTAGTGACATGGAAAGTCTGGGTCTTGAACTCTCAAT
GGGATATTGACTACTATTCTGATTATTTTATGATAGAATCCTTTCATGGGAGTCTCATTTTTTCACACCA
TCATGAAGAGATGGTTGAGTTTGTGAATTTTGTTCAAACAGTTAATCCCTACACATACCCAGAAGATGCT
TATCTTCCTAAATTTTGGGTTTTTTTCTTCAATTGCTCTTTTTCTGAGTTTGATTGCCAACTTTTAGAGA
ACTGCCAACCCAATGCATCTTTAGACTTACTCCCCAGACACATTTTTGACCCAGCAATGAGTGAAGAGAG
CTACAATATATACAATGCTGTATATGCTCTTGCTCACAGCCTCCATGAGATGACTGTTCAACAAATACAG
ACACAACCATATGCCAATGGAGAAGGAATGGCATTCTCCCCCTGGCAGATCCTCCCTTTTCTAAAGATCA
CCCTACTTAAAAACCATCCAAGTGGTCAAACTGTAATAGATGAGAGGAAAAACTTATATTCAGAATATGA
CATTTTCAATTTTTGGAATTTCCCAACGGGTCTTGGATTAAAGATGAAAGTAGGAACCTTTTCTCCAAAT
TCTCCCCAGGGTCACCGGTTGTCTTTATCTGAGGAAATGATACAATGGCCGACACAGTTTACAAAAATTC
CTCAGTCTGTGTGCAGTGAGAGCTGTAGGCCTGGATTCAGGAAAGCTGCCCAGGAGGGGAAGGCTGTCTG
CTGCTTTGATTGTATTCCTTGTGCAGACAATGAGATTTCCAATGAGACAGATATGGATCAGTGTGTGCAG
TGTCCAGAAAGTCACTATGCAAACTCAGAGAAGAATCACTGCCTTCAGAAATCTGTGAGCTTTTTGGCCT
ATGAAGAGCCCTTGGGGATAGCACTCACCATCACAGCACTGGACTTCTCTGTACTCACAGCTTTGGTTCT
TGTGGTCTTTGTGAAGCACAGAGACACACCCATTGTCAAGGCCAATAATCGGGTTCTCAGCTACATCCTG
CTATTGACACTCATAATCTGTTTTCTCAGTTGCTTGCTCTACATTGGACAGCCCAACACAGCCACCTGCA
TCTTGCAGCAAACAGCATTTGGAACTTTGTTCACTGTGGCTCTCTCCACAGTGTTAGCCAAAGCTATTGT
AGTGGTTACTGCATTCAAGGTCACCTCTCCATCTAGAATGGTGAGGTGGTTAATAGTATCAAGGGCCCCA
AATCTCATTATTCCCATCTGCACACTGATCCAACTTATTATCTGTGGAATATGGCTGGCTACCTTTCCAC
CTTTTATTGATCAAAATGCTCATGTTGAACATGGTCACATCATCATTATGTGCAACAAGGGTTCTGCAGT
TGCTTTCCACTGTGTACTGGGATACCTTTGCTCCTTAGCACTTGGGAGCTATACCATGGCCTTCTTATCC
AGGAATCTGCCTGACACATTCAATGAAGCCAAGTGCCTGTCATTCAGCATGCAGGTATTCTTCTGTGTTT
GGATCACTTTCCTCCCTGTCTACCATAGCACAAAGGGGAAGGTCATGGTGGCTATGGAAGTCTTCTCTAT
CTTGGCTTCCAGTACATCATTTCTTGCCTTGATATTTGTCCCTAAGTGCTACATAATTTTGTTAAGGCCA
GATAAGAACTCATGTCTTGATATCAGGAACAAAATACATTCAAGAAGAAGTAGTCATTTAAAATTTATTT
AA

Translation (863 aa):
MFWIFIFGVLYIPNFVCAFTGYMCYETIEEYTYHEGDLTIGAFFPLHIYSTRNHVPHELDPYYFQDMYLE
YNFMNYQFLLALMFTIQEINRNPHLLPNTTLGFEHHNIKFSEKNILLGPFLWLSGLSNQLVNYNCGQKRN
LPAALTGTSWAISAHIGTLLQLYKIPQFTFGHFDSNMNDQSQYKTLFQVAPEDTYLSLALVSLMLYFSWS
WVGLIVPNDPRGTQILSDFREVMESNRICLAFVKMIPGTWNSYSDAIWKNMEKIQESSANVIIIYGDTVS
LQGLMRHIAQLLVTWKVWVLNSQWDIDYYSDYFMIESFHGSLIFSHHHEEMVEFVNFVQTVNPYTYPEDA
YLPKFWVFFFNCSFSEFDCQLLENCQPNASLDLLPRHIFDPAMSEESYNIYNAVYALAHSLHEMTVQQIQ
TQPYANGEGMAFSPWQILPFLKITLLKNHPSGQTVIDERKNLYSEYDIFNFWNFPTGLGLKMKVGTFSPN
SPQGHRLSLSEEMIQWPTQFTKIPQSVCSESCRPGFRKAAQEGKAVCCFDCIPCADNEISNETDMDQCVQ
CPESHYANSEKNHCLQKSVSFLAYEEPLGIALTITALDFSVLTALVLVVFVKHRDTPIVKANNRVLSYIL
LLTLIICFLSCLLYIGQPNTATCILQQTAFGTLFTVALSTVLAKAIVVVTAFKVTSPSRMVRWLIVSRAP
NLIIPICTLIQLIICGIWLATFPPFIDQNAHVEHGHIIIMCNKGSAVAFHCVLGYLCSLALGSYTMAFLS
RNLPDTFNEAKCLSFSMQVFFCVWITFLPVYHSTKGKVMVAMEVFSILASSTSFLALIFVPKCYIILLRP
DKNSCLDIRNKIHSRRSSHLKFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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