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Report for CCDS23166.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23166.2 Public Mus musculus 9 Nkapd1 23 108 98 CCDS HistoryNCBI Gene:270156Re-query CCDS DB by CCDS ID:23166.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23166.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23166.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000131351.7 ENSMUSP00000123319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131351.7Link to Ensembl Protein Viewer:ENSMUSP00000123319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131351Re-query CCDS DB by Protein ID:ENSMUSP00000123319
Original member Current member EBI ENSMUST00000171462.7 ENSMUSP00000133259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171462.7Link to Ensembl Protein Viewer:ENSMUSP00000133259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171462Re-query CCDS DB by Protein ID:ENSMUSP00000133259
Original member NCBI NM_001134902.1 NP_001128374.1 Updated not alive Link to Nucleotide Sequence:NM_001134902.1Link to Protein Sequence:NP_001128374.1Re-query CCDS DB by Nucleotide ID:NM_001134902Re-query CCDS DB by Protein ID:NP_001128374
Current member NCBI NM_001134902.2 NP_001128374.1 Accepted alive Link to Nucleotide Sequence:NM_001134902.2Link to Protein Sequence:NP_001128374.1Re-query CCDS DB by Nucleotide ID:NM_001134902Re-query CCDS DB by Protein ID:NP_001128374Link to BLAST:NP_001128374.1
Original member NCBI NM_001360340.1 NP_001347269.1 Updated not alive Link to Nucleotide Sequence:NM_001360340.1Link to Protein Sequence:NP_001347269.1Re-query CCDS DB by Nucleotide ID:NM_001360340Re-query CCDS DB by Protein ID:NP_001347269
Current member NCBI NM_001360340.2 NP_001347269.1 Accepted alive Link to Nucleotide Sequence:NM_001360340.2Link to Protein Sequence:NP_001347269.1Re-query CCDS DB by Nucleotide ID:NM_001360340Re-query CCDS DB by Protein ID:NP_001347269Link to BLAST:NP_001347269.1
Original member NCBI NM_212449.2 NP_997614.2 Updated not alive Link to Nucleotide Sequence:NM_212449.2Link to Protein Sequence:NP_997614.2Re-query CCDS DB by Nucleotide ID:NM_212449Re-query CCDS DB by Protein ID:NP_997614
Current member NCBI NM_212449.3 NP_997614.2 Accepted alive Link to Nucleotide Sequence:NM_212449.3Link to Protein Sequence:NP_997614.2Re-query CCDS DB by Nucleotide ID:NM_212449Re-query CCDS DB by Protein ID:NP_997614Link to BLAST:NP_997614.2

Chromosomal Locations for CCDS 23166.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50607432 50607936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50609372 50609425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50610300 50610449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50612377 50612477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50615483 50615551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGTCCCGGGTTCCGTTGGGGAAAGTCCTCTTGAGGAATGTCATCCGGCACACAGATGCTCACAATAAGA
TTCAGGAGGAGTCTGACATGTGGAAAATCAGAGAACTAGAGAAGCAGATGGAGGATGCTTACCAGGGGAC
CAGAAGGAACACAGTGCCCAGCAGCTCAAGTCGGATGAGAAGTGATGGTTTTGATGAAGAAAGTCAGAGA
GATTACTGGAGGTCAAAGAATGAAATTTCTGGGGCCTTGGAAGATGATTTTCTTAAGACTAAGTCCTGGA
ACAAGAAGTTATATGATTATGAATCCAATATACCAGACAGATGGGGTCACAGTGGTTATAAAGAGTTGTA
TCCTGAAGAGTTTGAAACAGACAGTAGTGATCAGCAAGACATTACCAATGGAAAAAAACCATCTCCCCAG
GTAAAATCATCTGCCCGTGAATCTCGAAAACATAAGAAGTCAAAGAAATCCCATAAGAAGAAGCAGAAAA
AACGGTCACACAAAAAACAGAAGAAAAACAAAAAGGAAGTTACGGACATAACAGCAGATTCCTCAAGTGA
GTTCTCAGAGGAAACTCGAGCTTCTAGTACTAGGAAAAGGAAGCAACCACACAAGAGCAAGAAAAAGTCC
AGGAAAAAGTCTCCTAAAATCACTTTCCCTTTAGGGGGAGAAAGTGGTACTTCTCAGTCAGAGGATTCTG
CATCTAGCAGTTCTGAGGACATCGAGGAAAGAGATACTAAGAAAACCAAACGGAAAAAGAAAGAGAAGAG
TGTCCATGTCCCCATGCCTGACCCTGAGGTACAGGAGAGGACAAGCAAGCGCAGGAACTGGAAGGTGGCT
ACCGACGCCAGGTCTGCTGAGAGCTCGGAGGATGACTAA

Translation (292 aa):
MSRVPLGKVLLRNVIRHTDAHNKIQEESDMWKIRELEKQMEDAYQGTRRNTVPSSSSRMRSDGFDEESQR
DYWRSKNEISGALEDDFLKTKSWNKKLYDYESNIPDRWGHSGYKELYPEEFETDSSDQQDITNGKKPSPQ
VKSSARESRKHKKSKKSHKKKQKKRSHKKQKKNKKEVTDITADSSSEFSEETRASSTRKRKQPHKSKKKS
RKKSPKITFPLGGESGTSQSEDSASSSSEDIEERDTKKTKRKKKEKSVHVPMPDPEVQERTSKRRNWKVA
TDARSAESSEDD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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