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Report for CCDS40910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40910.1 Public Mus musculus X Btbd35f1 23 108 98 CCDS HistoryNCBI Gene:71847Re-query CCDS DB by CCDS ID:40910.1Re-query CCDS DB by GeneID:71847See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238237.1 ENSMUSP00000158585.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238237.1Link to Ensembl Protein Viewer:ENSMUSP00000158585.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238237Re-query CCDS DB by Protein ID:ENSMUSP00000158585
Original member Current member NCBI NM_027955.3 NP_082231.2 Accepted alive Link to Nucleotide Sequence:NM_027955.3Link to Protein Sequence:NP_082231.2Re-query CCDS DB by Nucleotide ID:NM_027955Re-query CCDS DB by Protein ID:NP_082231Link to BLAST:NP_082231.2

Chromosomal Locations for CCDS 40910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 32560140 32561636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGGGCTTTTAGTCAGCAGGGTCTTGAGTTGCAGGGATTCCAGTCTGTTAGAGCCACAGCCAGAAGCCA
TAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGGCAACAAG
TTCTAATGTTCATGGACCTCAAAACCAGGGAATGTATCCACATCAAGTTCTCAACTACATCTACTGGAAA
AAGGTTAAGATCTCATCTAATGATGCTTATCAAAACTTATTTTTGGACGGGCATGATAGCGACATTAAAA
TCCGTGCTCTGGGAAGAACATGGTGTTTACACAAAGTATTTTTATGTCAGTCAGGCTACTTTGCTAACAT
TCTCAAAGGTACTTGGAGAGAATCACACCATGGTGTTATAAATCTGATCATTAAGAATGAGGATATTGAT
ACCCGATCTCTGCATTTTGTGTTTGGTGCTTTGTACACGGATGCGGATTTGTCAATAACACCTCTGGAAG
TTCCTCAAGTTTTGGCAGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGCAGTGTGAAGGAATCAT
GAAAGAAACTATCAACAGGAACACTGTGTGCTCCTATTATTTGGCAGCAGAAACCTATAGATTAAAAGCT
GTAAAGACGAGATGCTTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGG
AAGTAGATTTGAAGTTGATGTATCTTCTAGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGA
TGTATATACCACACTAAAAATATGGATGTTCCTTTATCTTAATCCATGCTGGAACGGAACCACGAAACAG
CTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACATCAGTTTTCTTGAAA
GTGAAGAAGGACTAATATTTCAACCAGTGTTTAAAAAGCTGAGATTTCAGCACATCATCTGTGACTTGAC
TTCCACAACTATTCTTGAACAAGATCGACTAATACCTATGGCATGGTTGTCACCCATTTACAAACAACAG
TGGTTGACTTTGCTGCGAACACAAGAATATGGGGTAATTGGACCACAAGTTATCAATGAACAAGAACTTG
AAGAATGCACCATGAGGTGTGGTACAATGATCCCCAAGGATGGAAGATATACTTGGAAGTGGTCAGTTGG
ACGACTTGGCTTTCCTTTACGTGTGACCTTTACCAGGCAGTGTGTAATTTTAAGGCAACGGTGTCAGAGG
TGTGATGGTTCTGCTTGCCACAACCATATCCGAAATGTCATATTCAGAATAACTTTGGTGTGTTTTGATT
CCAACAAAAGAGTAACTTTCAGAAAGACAACAGGTTATAAAATCCTCACCTTTGAATATAAGGAGGAGCA
AATTGTAATGAAATTGGATAGTGATGTTCTAACCTTCCCTATGTGTATATTCTGCAATTTCCTTTTTGTA
AACCTAGGAAATGCAGAAAACAAGTAA

Translation (498 aa):
MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWK
KVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDID
TRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKA
VKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTTKQ
LLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQ
WLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQR
CDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFV
NLGNAENK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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