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Report for CCDS51921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51921.1 Public Mus musculus 6 Clec2g 23 108 98 CCDS HistoryNCBI Gene:70809Re-query CCDS DB by CCDS ID:51921.1Re-query CCDS DB by GeneID:70809See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075789.3 ENSMUSP00000075192.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075789.3Link to Ensembl Protein Viewer:ENSMUSP00000075192.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075789Re-query CCDS DB by Protein ID:ENSMUSP00000075192
Original member Current member EBI ENSMUST00000142388.7 ENSMUSP00000115140.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142388.7Link to Ensembl Protein Viewer:ENSMUSP00000115140.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142388Re-query CCDS DB by Protein ID:ENSMUSP00000115140
Original member Current member NCBI NM_001168224.1 NP_001161696.1 Accepted alive Link to Nucleotide Sequence:NM_001168224.1Link to Protein Sequence:NP_001161696.1Re-query CCDS DB by Nucleotide ID:NM_001168224Re-query CCDS DB by Protein ID:NP_001161696Link to BLAST:NP_001161696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161696.1 207 Q9D676-2 207 100% 0 0

Chromosomal Locations for CCDS 51921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128979409 128979478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128980184 128980309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128981205 128981383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128981862 128981968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128982946 128983087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGAATGCTCAGTGCCTAAAGAAGCCAGAAGAAGGCGAAAGCTCCCCCGGAACTGGAGGTGTACATTCTT
ATAAAATTCTCCAAAGAAATAGTCTCAGAGCCATCTCCCCTGAGTCTTCTGCTAAGCTTTACTGCTGCTG
TGGAGTGATCATGGTCCTCACTGTAGCTGTAGTTGCTCTTTCTGTTGCTTTGCCAGCAACAAAGACAGAA
CAGATCCTAATCAACAAGACCTATGCTGCTTGCCCGAAAAACTGGATTGGAGTTGGAAATAAATGTTTTT
ATTTTTCTGAATACACAAGTAACTGGACATTCGCCCAGACCTTCTGCATGGCACAAGAGGCCCAACTAGC
TCGGTTTGACAACGAGAAGGAGCTGAATTTCCTAATGAGATACAAGGCAAATTTTGATTCCTGGATTGGA
CTGCACAGAGAGTCGTCAGAGCACCCTTGGAAGTGGACAGACAACACTGAGTATAACAACATGATTCCCA
TCCAGGGAGTGGAAACATGTGCCTACCTGAGCGGCAATGGGATCAGCAGTTCCAGGCACTATATACCTCG
GATATGGATCTGTAGCAAGCTTAACAACTATAGCCTCCACTGCCCAACTCCTGTTCCTGTCTAG

Translation (207 aa):
MNAQCLKKPEEGESSPGTGGVHSYKILQRNSLRAISPESSAKLYCCCGVIMVLTVAVVALSVALPATKTE
QILINKTYAACPKNWIGVGNKCFYFSEYTSNWTFAQTFCMAQEAQLARFDNEKELNFLMRYKANFDSWIG
LHRESSEHPWKWTDNTEYNNMIPIQGVETCAYLSGNGISSSRHYIPRIWICSKLNNYSLHCPTPVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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