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Report for CCDS37088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37088.1 Public Mus musculus 15 Gsdmc3 23 108 98 CCDS HistoryNCBI Gene:270328Re-query CCDS DB by CCDS ID:37088.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089894.5 ENSMUSP00000087339.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089894.5Link to Ensembl Protein Viewer:ENSMUSP00000087339.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089894Re-query CCDS DB by Protein ID:ENSMUSP00000087339
Original member Current member EBI ENSMUST00000190682.6 ENSMUSP00000139472.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190682.6Link to Ensembl Protein Viewer:ENSMUSP00000139472.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190682Re-query CCDS DB by Protein ID:ENSMUSP00000139472
Original member Current member EBI ENSMUST00000185526.6 ENSMUSP00000140272.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185526.6Link to Ensembl Protein Viewer:ENSMUSP00000140272.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185526Re-query CCDS DB by Protein ID:ENSMUSP00000140272
Original member Current member NCBI NM_183194.3 NP_899017.2 Accepted alive Link to Nucleotide Sequence:NM_183194.3Link to Protein Sequence:NP_899017.2Re-query CCDS DB by Nucleotide ID:NM_183194Re-query CCDS DB by Protein ID:NP_899017Link to BLAST:NP_899017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899017.2 480 Q8CB12 480 100% 0 0

Chromosomal Locations for CCDS 37088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 63858271 63858549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63859093 63859166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63859592 63859721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63860216 63860361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63861184 63861210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63861443 63861472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63861584 63861685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63864095 63864200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63866663 63866825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63868283 63868460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63869090 63869297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGGCTACAGTTTTGACCGGGCTAGCAAGGATGTGGTTAAAAAGCTTCAAGGAAGAGATCTGAGGCCTG
TGGAATGCTTGTCAGATGCAACCAAATTCCGCCTATTTCACATACTCCAGGAGACTCCTCGATCAGGTTG
GGAAACTGAAGATATTCCAGTTGGATTTACCCTTCTGGATCTCTTGGAGCCCAACTTTCCTGTTCCAGAG
CCTGAAGTGTCTGCTCCCAAGCCCTTCATACATGTCCAATCAACGGACCTGGAGGCTAACTTGAATGTCG
CAGACATTGCAAGAGGAGGTGTAGGGTATGTTGGGTACGGTGGATACAACATCGAGGTTCAGAGTACAAG
CATCCCAAATCCAAAACTGGAAATTCTTCAAAACAGGAAACTGTTGGATAAGTTGCCCACATTTATGAAG
TTTTGCCGGATGGAAAGGAAGAACCTGTATGTGGTGACAGAGGCTTATGAAGTGTCCAAGGATACTATGC
TGACAGGCTTAAGCAGTGTCAATCTTTTAGTTAAAGGGTTCTTCAAACAGCTTTTCAAGGTTCGAGGCAA
GGCGGGAAGGTCGGAAAAGTATTCAATACCTATCCCAAAGGGTTCGGTGTTGGCCTATAAGAAGCAGCAA
CTTGTCATTGAGAATAACACTTGTGTCATTCTCCCTTCTGCTACTAAGAAGAAGATGACCTTTCCAGGCA
CACCTAAGTACGCTTCTGCTTCCGAACCCACTGAGATTTATAGAACAGAATTACAAGGTTTGTGGATAAA
TGACATCGAACCAATTGGAAGAATCCAGGAGCCCGCCCATCTAGATTTCAAGTGCCTACAATATGAAGTT
TCTGAACAAACACGACTACTGCCTGAACTCTCAAAGGATGTTCAAGAAGTTGTGTTGTCCAGTTTCCTGT
CCATGCTCTATGAAGGTGACAGGAACGTTCTGCATGACCTGATGAAAATGCTGGAGTTGAGTCAGTTGGG
GCATATGGATGGCCCAGGTGGCAAAATCCTGGATGAGCTTCGAAAGGATTCTAGCAACCCATGTGTTGAC
CTAAAGGACCTCATTCTTTATCTCCTTCAAGCGCTGATGGTGCTCAGTGATAGCCAACTCAATCTGCTGG
CCCGGTCTGTGGAGATGCGGCTCCTCCCGCACCAAGTAGAGCTGGTAACGAGCATCCTACAGCCAAACTT
CAAGTATCCCTGGAACATTCCCTTCACAGTCCAGCCTCAGCTTCTTGCCCCACTCCAGGGTGAGGGCTTG
GCCATTACTTATGAATTGCTGGAGGAGTGTGGTCTGAAGATGGAGCTGAATAATCCCAGGTCAACTTGGG
ATTTGGAAGCCAAGATGCCCTTGTCTGCTCTCTATGGAAGCCTGTCATTTTTACAGCAACTTCAGAAGGC
TAACTCTTCCTTCAAGCCCAGCCTCCGACCTGGATACATTTGA

Translation (480 aa):
MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPE
PEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMK
FCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQ
LVIENNTCVILPSATKKKMTFPGTPKYASASEPTEIYRTELQGLWINDIEPIGRIQEPAHLDFKCLQYEV
SEQTRLLPELSKDVQEVVLSSFLSMLYEGDRNVLHDLMKMLELSQLGHMDGPGGKILDELRKDSSNPCVD
LKDLILYLLQALMVLSDSQLNLLARSVEMRLLPHQVELVTSILQPNFKYPWNIPFTVQPQLLAPLQGEGL
AITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSFKPSLRPGYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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