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Report for CCDS384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
384.1 Public Homo sapiens 1 GJB3 24 110 108 CCDS HistoryNCBI Gene:2707Re-query CCDS DB by CCDS ID:384.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 384.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373362.3 ENSP00000362460.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373362.3Link to Ensembl Protein Viewer:ENSP00000362460.3Re-query CCDS DB by Nucleotide ID:ENST00000373362Re-query CCDS DB by Protein ID:ENSP00000362460
Original member Current member EBI ENST00000373366.3 ENSP00000362464.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373366.3Link to Ensembl Protein Viewer:ENSP00000362464.2Re-query CCDS DB by Nucleotide ID:ENST00000373366Re-query CCDS DB by Protein ID:ENSP00000362464
Original member Current member NCBI NM_001005752.2 NP_001005752.1 Accepted alive Link to Nucleotide Sequence:NM_001005752.2Link to Protein Sequence:NP_001005752.1Re-query CCDS DB by Nucleotide ID:NM_001005752Re-query CCDS DB by Protein ID:NP_001005752Link to BLAST:NP_001005752.1
Original member Current member NCBI NM_024009.3 NP_076872.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024009.3Link to Protein Sequence:NP_076872.1Re-query CCDS DB by Nucleotide ID:NM_024009Re-query CCDS DB by Protein ID:NP_076872Link to BLAST:NP_076872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005752.1 270 O75712 270 100% 0 0
NP_076872.1 270 O75712 270 100% 0 0

Chromosomal Locations for CCDS 384.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34784763 34785575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGACTGGAAGACACTCCAGGCCCTACTGAGCGGTGTGAACAAGTACTCCACAGCGTTCGGGCGCATCT
GGCTGTCCGTGGTGTTCGTCTTCCGGGTGCTGGTATACGTGGTGGCTGCAGAGCGCGTGTGGGGGGATGA
GCAGAAGGACTTTGACTGCAACACCAAGCAGCCCGGCTGCACCAACGTCTGCTACGACAACTACTTCCCC
ATCTCCAACATCCGCCTCTGGGCCCTGCAGCTCATCTTCGTCACATGCCCCTCGCTGCTGGTCATCCTGC
ACGTGGCCTACCGTGAGGAGCGGGAGCGCCGGCACCGCCAGAAACACGGGGACCAGTGCGCCAAGCTGTA
CGACAACGCAGGCAAGAAGCACGGAGGCCTGTGGTGGACCTACCTGTTCAGCCTCATCTTCAAGCTCATC
ATTGAGTTCCTCTTCCTCTACCTGCTGCACACTCTCTGGCATGGCTTCAATATGCCGCGCCTGGTGCAGT
GTGCCAACGTGGCCCCCTGCCCCAACATCGTGGACTGCTACATTGCCCGACCTACCGAGAAGAAAATCTT
CACCTACTTCATGGTGGGCGCCTCCGCCGTCTGCATCGTACTCACCATCTGTGAGCTCTGCTACCTCATC
TGCCACAGGGTCCTGCGAGGCCTGCACAAGGACAAGCCTCGAGGGGGTTGCAGCCCCTCGTCCTCCGCCA
GCCGAGCTTCCACCTGCCGCTGCCACCACAAGCTGGTGGAGGCTGGGGAGGTGGATCCAGACCCAGGCAA
TAACAAGCTGCAGGCTTCAGCACCCAACCTGACCCCCATCTGA

Translation (270 aa):
MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGCTNVCYDNYFP
ISNIRLWALQLIFVTCPSLLVILHVAYREERERRHRQKHGDQCAKLYDNAGKKHGGLWWTYLFSLIFKLI
IEFLFLYLLHTLWHGFNMPRLVQCANVAPCPNIVDCYIARPTEKKIFTYFMVGASAVCIVLTICELCYLI
CHRVLRGLHKDKPRGGCSPSSSASRASTCRCHHKLVEAGEVDPDPGNNKLQASAPNLTPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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