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Report for CCDS28562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28562.1 Public Mus musculus 17 Ip6k3 23 108 98 CCDS HistoryNCBI Gene:271424Re-query CCDS DB by CCDS ID:28562.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025046.3 ENSMUSP00000025046.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025046.3Link to Ensembl Protein Viewer:ENSMUSP00000025046.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025046Re-query CCDS DB by Protein ID:ENSMUSP00000025046
Original member Current member NCBI NM_173027.2 NP_766615.1 Accepted alive Link to Nucleotide Sequence:NM_173027.2Link to Protein Sequence:NP_766615.1Re-query CCDS DB by Nucleotide ID:NM_173027Re-query CCDS DB by Protein ID:NP_766615Link to BLAST:NP_766615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766615.1 396 Q8BWD2 396 100% 0 0

Chromosomal Locations for CCDS 28562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27144882 27145322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27148471 27148646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27149921 27150096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27151045 27151243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27157537 27157735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGTGGTGCGGCACAGCTCGGACAAGGGGAAGATAGGGGTGGGTGTGCCACTGGAGCCCTTCCTGCACC
AGGTCGGGGGCCACCTGAGTGTGCTGCAGTATGACGCCTACACAGTCTGCAAGCCCCTTGTCTCCCAGGA
ACAGAAATTCTATGAGTCCCTGCCACTGGCCATGAAGTGCTTCACTCCGAAGTACAAAGGTACCATCACA
GTGCGTCTCCGGAGAGACAGCAGAGGCCACCTTGGCCTGGTTGCCAACCCACTGAAGGAGAACCTGGAGC
CTTTCCAGGTCTCCCCAGAGTCCAGAGCGGTAGCTCTCTGGCAGACACTTCAGCAGACAACCGGCAGCGA
GAGCAGCCCCTGCCCCCTCACCCAGCTGGCTCGCTCACTGAAGGAGAGTGCAGCCAAGGTGCTCCTGAGG
TCCGACTGCCACCTCAGTACCCAGGCCTCTCCGCTGGTGGAAAGTGAAGATGGGAGCCAGGTGGAGAGAA
AGGGCTTTAACCCATGGGGCCTGCACTGTCACCAAGCCCACCTGACTCGTCTGTGCTCCCAGTACCCAGA
GGACAAGAGACACCGGTTCTTGCTGTTGGAAAATGTGGTGTCACAGTACAAGCAGCCCTGCATCCTGGAT
CTGAAGATGGGGACCCGCCAGCATGGGGACGATGCATCCGAGGAGAAGAAGGCCCGTCACATGAAGAAGT
GCGCACAGAGCACCTCGGCCTGTCTGGGTGTGCGCATCTGTGGCATGCAGGTTTATCAAACTGATCAGAA
GAGCTTTCTCTGCAAAGATAAGTACTATGGAAGGAAGCTCTCGGTGGAGGGATTCAGGCAAGCCCTTTCT
CAGTTCCTCCATGATGGAACCCGCCTCCGCGCCGAGCTCCTGGAGCCCATCCTGCGTAGGCTGCAGGCGC
TGCTCACTGTCATCAGGAGCCAGAGTTCTTACCGCTTCTACTCCAGCTCCGTCCTCATAATCTATGATGG
GGAGCCTCCCCAGACCACCCAAGGCAGCACTTCTGGCGGCGTCACTTCCGGAGACCCGGCCAAAGTTGAT
GTCCGGATGATTGACTTCGCTCACACGACATTCAAGGGCTCCTGGAACGAGCACACCACCTACGAGGGAC
CAGATCCTGGCTATATTTTTGGCCTGGAAAACCTCATTGGGATTCTGCGGGATATCCAGGAAGGAGAATG
A

Translation (396 aa):
MVVRHSSDKGKIGVGVPLEPFLHQVGGHLSVLQYDAYTVCKPLVSQEQKFYESLPLAMKCFTPKYKGTIT
VRLRRDSRGHLGLVANPLKENLEPFQVSPESRAVALWQTLQQTTGSESSPCPLTQLARSLKESAAKVLLR
SDCHLSTQASPLVESEDGSQVERKGFNPWGLHCHQAHLTRLCSQYPEDKRHRFLLLENVVSQYKQPCILD
LKMGTRQHGDDASEEKKARHMKKCAQSTSACLGVRICGMQVYQTDQKSFLCKDKYYGRKLSVEGFRQALS
QFLHDGTRLRAELLEPILRRLQALLTVIRSQSSYRFYSSSVLIIYDGEPPQTTQGSTSGGVTSGDPAKVD
VRMIDFAHTTFKGSWNEHTTYEGPDPGYIFGLENLIGILRDIQEGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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