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Report for CCDS38757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38757.1 Public Mus musculus 4 Tstd2 23 108 98 CCDS HistoryNCBI Gene:272027Re-query CCDS DB by CCDS ID:38757.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107770.1 ENSMUSP00000103399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107770.1Link to Ensembl Protein Viewer:ENSMUSP00000103399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107770Re-query CCDS DB by Protein ID:ENSMUSP00000103399
Original member Current member EBI ENSMUST00000107772.7 ENSMUSP00000103401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107772.7Link to Ensembl Protein Viewer:ENSMUSP00000103401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107772Re-query CCDS DB by Protein ID:ENSMUSP00000103401
Original member Current member NCBI NM_001355375.1 NP_001342304.1 Accepted alive Link to Nucleotide Sequence:NM_001355375.1Link to Protein Sequence:NP_001342304.1Re-query CCDS DB by Nucleotide ID:NM_001355375Re-query CCDS DB by Protein ID:NP_001342304Link to BLAST:NP_001342304.1
Original member Current member NCBI NM_001355376.1 NP_001342305.1 Accepted alive Link to Nucleotide Sequence:NM_001355376.1Link to Protein Sequence:NP_001342305.1Re-query CCDS DB by Nucleotide ID:NM_001355376Re-query CCDS DB by Protein ID:NP_001342305Link to BLAST:NP_001342305.1
Original member Current member NCBI NM_173033.3 NP_766621.3 Accepted alive Link to Nucleotide Sequence:NM_173033.3Link to Protein Sequence:NP_766621.3Re-query CCDS DB by Nucleotide ID:NM_173033Re-query CCDS DB by Protein ID:NP_766621Link to BLAST:NP_766621.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342304.1 495 Q3U269 495 100% 0 0
NP_001342305.1 495 Q3U269 495 100% 0 0
NP_766621.3 495 Q3U269 495 100% 0 0

Chromosomal Locations for CCDS 38757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46116845 46117083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46119143 46119281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46119841 46119999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46120448 46120566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46124043 46124148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46124900 46125025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46129227 46129347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46131843 46132156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46135387 46135551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGCCTTCTTCCACTTCACCAGACGAAGAGGATGGCCTGGAGACCTGTGTTTTAAAGGTTTTTGATCTGG
ATTTAAAAGAATCAAATCTTGTTAATCCCAGCAACAGTCTCAAAGCAGAGTTAGATGGCAGCACAAAGAA
AAAATACTCGTTTGCAAAGAAAAAGGCCTTTGCCCTTTTGGTCAAAACCAAACAAGTTCCAGCACCCTCT
TATGAATTTAAGGGAAAACGGTGGCGATGTTGTCAGCAGCTGTTTGCAGACCAGATCAGCATCCACAGAC
ATGTGGCCACACAGCATGCTGAAGACGTGTACCAGCAGACTGCGTCTCTTCTGAAGCAGCTGACTGCAGC
ATTGAGTGCCTCACAGAGCCTTACGCCCACAGACAAAAGGAGCTCCCCCAAAGACTGTCTCACTCCTAGT
CAGGAGGTGTCTGCTTGGCTTCCTGATGTGAGCCATGTTAGCCCCCAGGAGCTGAGGAGTGGCCAGGGTG
ACGAGGAAGGAGAGGTGCTCCTGTATTACTGCTACTGTGACTTGGAGGACCCCCATTGGGTCTGTGCCTG
GCAGACAGCTCTGTGCCATCACCTGCACCTTACAGGCAAGATTCGGATTGCTACTGAAGGAATCAATGGA
ACTGTTGGCGGAAGCAAAGTGGCCACCAGACTCTACGTGGAAGTCATGCTTTCCTGCCCATTATTTAAGG
ATTACCTGAGCGAGGATGATTTTAAGAGCAGCAAAGGAGGGTCTCACTGCTTCCCGGAATTGCGAGTCGG
TGTGTTTGAAGAGATCGTGCCTATGGGGATCAGCCCCAGTCAGGTCTCCTACAAGAAGCCCGGAATCCAT
TTATCCCCTGGTGAATTTCATAAAGAAATAGAAAAGCTTTTATCACAGTCAAGTGAGGAACAAGGCAATA
CTATCATACTGGACTGCAGGAACTTCTATGAAAGCAAAATAGGACGATTCCAGGGCTGCTTAGCACCAGA
CATCAGGAAATTCAGTTACTTCCCTAGCTACGTTGACAAAAACCTTGACATTTTCAGGCAGAAGAGGGTG
CTGATGTACTGCACTGGGGGCATTCGCTGTGAGCGGGGTTCCGCATACCTCAGAGCCAAGGGAGTGTGTA
AGGAAGTGTTTCAGCTCAAGGGTGGCATCCACAAGTACTTGGAAGAGTTTCCTGATGGCTTTTACAAAGG
GAAGCTGTTTGTGTTTGATGAGCGGTTTGCCCTGGCCTACAACAGTTCTGTGGTATCAGAATGTTCATAC
TGCGGAGCCCCATGGGACCAATACAAACTCTGCTCTACTCCCCAATGCCGCCAGCTTGTGTTGACCTGTT
CTGCCTGTCAAGGACAAGGATTCACAGCCTGTTGTGTCACGTGTCAAGACAAAGGGGGCAAGCAGGCTTC
AGGCCCCTCCCAGGACAGTTTTAAAGAAGAATGTGAGTGTACTGCCCGGAGGCCACGAATCCCACAGGAA
CAGCAGGCACAGTCATGA

Translation (495 aa):
MPSSTSPDEEDGLETCVLKVFDLDLKESNLVNPSNSLKAELDGSTKKKYSFAKKKAFALLVKTKQVPAPS
YEFKGKRWRCCQQLFADQISIHRHVATQHAEDVYQQTASLLKQLTAALSASQSLTPTDKRSSPKDCLTPS
QEVSAWLPDVSHVSPQELRSGQGDEEGEVLLYYCYCDLEDPHWVCAWQTALCHHLHLTGKIRIATEGING
TVGGSKVATRLYVEVMLSCPLFKDYLSEDDFKSSKGGSHCFPELRVGVFEEIVPMGISPSQVSYKKPGIH
LSPGEFHKEIEKLLSQSSEEQGNTIILDCRNFYESKIGRFQGCLAPDIRKFSYFPSYVDKNLDIFRQKRV
LMYCTGGIRCERGSAYLRAKGVCKEVFQLKGGIHKYLEEFPDGFYKGKLFVFDERFALAYNSSVVSECSY
CGAPWDQYKLCSTPQCRQLVLTCSACQGQGFTACCVTCQDKGGKQASGPSQDSFKEECECTARRPRIPQE
QQAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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