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Report for CCDS18798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18798.1 Public Mus musculus 4 Eloa 23 108 98 CCDS HistoryNCBI Gene:27224Re-query CCDS DB by CCDS ID:18798.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030427.5 ENSMUSP00000030427.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030427.5Link to Ensembl Protein Viewer:ENSMUSP00000030427.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030427Re-query CCDS DB by Protein ID:ENSMUSP00000030427
Original member Current member NCBI NM_013736.4 NP_038764.2 Accepted alive Link to Nucleotide Sequence:NM_013736.4Link to Protein Sequence:NP_038764.2Re-query CCDS DB by Nucleotide ID:NM_013736Re-query CCDS DB by Protein ID:NP_038764Link to BLAST:NP_038764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038764.2 773 Q8CB77 773 100% 0 0

Chromosomal Locations for CCDS 18798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136005616 136005677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136006171 136006349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136007112 136007223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136007780 136007960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136009046 136009143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136009246 136009401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136009750 136009864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136010229 136011408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136012870 136012976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136014400 136014456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136021551 136021625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGGCGGCGGAGTCGGCGCTCCAAGTTGTGGAGAAGCTCCAGGCGCGCCTGGCTGCGAACCCGGACCCCA
AGAAGCTATTGAAATATTTGAAGAAACTTTCCATCTTACCTATCACAGTAGACATTCTTGTGGAGACTGG
GGTAGGGAAAACAGTGAACAGCTTTCGGAAGCATGAGCAAGTAGGAAACTTTGCCAGAGACCTGGTGGCC
CAGTGGAAGAAGCTGGTTCCAGTAGAGCGAAATAGTGAGGCCGAGGATCAGGATTTTGAGAAGAACAATT
CCCGTAAGCGTCCCAGAGATGCTCTTCAGAGGGAGGAGGAGTTGGAGGGGAACTACCAGGAAAGCTGGAA
ACCCTCTGGTAGCCGGTCCTACAGCCCTGAGCACAGACAGAAAAAACACAAAAAACTTTCTGAGCCTGAA
AGGCCTCACAAAGTGGCTCACAGTCACGAGAAGAGAGATGAAAGGAAGAGGTGTCACAAAGTGTCACCAC
CATATTCTTCAGACCCCGAGTCATCTGACTATGGCCATGTTCAATCCCCTCCACCTTCAAGTCCTCATCA
AATGTATACAGACCTCTCCAGGTCCCCAGAGGAGGACCAGGAGCCCATCATCTCACACCAGAAGCCAGGA
AAAGTCCACAGTAATACCTTTCAGGACAGACTAGGGGTTAGTCACCTGGGTGAACAAGGAAAAGGGGCTG
TTAGCCACCACAAGCAGCACAGATCTTCACACAAGGAGAAGCACCCTGCAGATGCCAGAGAGGATGAGAA
GATCTCTGCTGTGAGCAGAGAGAAGTCACACAAAGCCTCTTCCAAAGAGGAAAGCCGAAGACTACTGTCA
GGGGACAGTGCCAAGGAGAAGCTGCCCTCTAGTGTTGTTAAGAAAGACAAGGACAGAGAAGGCAGCAGTC
TCAAGAAGAAGTTTTCACCTGCCTTAGATGTTGCTTCAGACAACCACTTTAAAAAGCCCAAACACAAGGA
CTCCGAGAAAGCCAAATCTGACAAAAACAAGCAGAGTGTAGATGGCGTGGACTCAGGACGAGGGACAGGA
GACCCATTGCCCAAAGCCAAGGAGAAAGTTCCCAACCACCTGAAGGCTCAGGAGGGGAAAGTAAGAACTA
ACGCAGATGGAAAGTCAGCAGGCCCGCTCCACCCTAAAGCGGAGGAGACAGATGTGGACGATGAGTTTGA
GCGGCCCACGATGTCCTTCGAGTCCTACCTCAGCTATGACCAGCCCCGGAAGAAAAAGAAGAAGGTTGTG
AAAACGTCCAGTACAGCACTTGGAGAAAAAGGACTTAAAAAAAAGGACTCTAAAAGCACTAGTAAAAACT
TGAACTCAGCTCAGAAATTGCCCAAAGTCAACGAAAACAAGTCAGAGAAGTTGCAGCCAGCTGGAGCCGA
ACCCACCAGGCCTCGAAAGGTCCCTACTGATGTGCTGCCAGCATTGCCAGACATCCCCTTACCTGCCATT
CATGCCAACTACCGGCCCCTTCCTTCCCTTGAGTTGATTCCCTCCTTTCAGCCAAAGCGAAAAGCTTTCT
CTTCACCCCAGGAAGAAGAAGAAGCTGGGTTCACAGGACGCAGAATGAATTCTAAGATGCAGGTGTATTC
TGGTTCCAAGTGTGCCTATCTCCCCAAAATGATGACATTGCACCAGCAGTGTATCCGGGTGCTTAAGAAT
AATATTGACTCTATCTTTGAAGTAGGAGGAGTCCCCTATTCTGTTCTTGAACCTGTCTTGGAGAGGTGCA
CACCTGATCAGCTCTACCGGATAGAGGAATGCAATCATGTATTAATTGAAGAAACAGATCAGTTGTGGAA
AGTTCACTGTCACCGAGACTTTAAGGAAGAAAGGCCAGAAGAGTATGAGTCCTGGAGGGAGATGTACCTG
AGGCTTCAGGACGCCAGAGAGCAGCGGCTGCGCCTGCTCACAAACAACATCCGCTCTGCTCATGCCAATA
AGCCAAAGGGACGACAAGCAAAGATGGCTTTTGTCAACTCTGTGGCCAAGCCACCAAGAGATGTCCGAAG
AAGGCAGGAGAAGTTTGGAACCGGGGGAGCAGCTGTTCCTGAGAAAGTCAGGATAAAGCCAGCGCCATAT
ACAACAGGAAGCAGCCATGTTCCTGCCAGCAACAGCAGCAGCAACTTCCACTCCAGTCCTGAGGAGCTGG
CCTATGATGGGCCCAGTACTAGCAGTGCCCACTTAGCTCCTGTGGCCAGCAGTTCTGTTTCCTATGATCC
CAGGAAACCAGCTGTGAAGAAAATTGCTCCGATGATGGCCAAGACCATTAAAGCATTCAAGAACAGATTC
TCCCGGCGATAA

Translation (773 aa):
MAAESALQVVEKLQARLAANPDPKKLLKYLKKLSILPITVDILVETGVGKTVNSFRKHEQVGNFARDLVA
QWKKLVPVERNSEAEDQDFEKNNSRKRPRDALQREEELEGNYQESWKPSGSRSYSPEHRQKKHKKLSEPE
RPHKVAHSHEKRDERKRCHKVSPPYSSDPESSDYGHVQSPPPSSPHQMYTDLSRSPEEDQEPIISHQKPG
KVHSNTFQDRLGVSHLGEQGKGAVSHHKQHRSSHKEKHPADAREDEKISAVSREKSHKASSKEESRRLLS
GDSAKEKLPSSVVKKDKDREGSSLKKKFSPALDVASDNHFKKPKHKDSEKAKSDKNKQSVDGVDSGRGTG
DPLPKAKEKVPNHLKAQEGKVRTNADGKSAGPLHPKAEETDVDDEFERPTMSFESYLSYDQPRKKKKKVV
KTSSTALGEKGLKKKDSKSTSKNLNSAQKLPKVNENKSEKLQPAGAEPTRPRKVPTDVLPALPDIPLPAI
HANYRPLPSLELIPSFQPKRKAFSSPQEEEEAGFTGRRMNSKMQVYSGSKCAYLPKMMTLHQQCIRVLKN
NIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEECNHVLIEETDQLWKVHCHRDFKEERPEEYESWREMYL
RLQDAREQRLRLLTNNIRSAHANKPKGRQAKMAFVNSVAKPPRDVRRRQEKFGTGGAAVPEKVRIKPAPY
TTGSSHVPASNSSSNFHSSPEELAYDGPSTSSAHLAPVASSSVSYDPRKPAVKKIAPMMAKTIKAFKNRF
SRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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