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Report for CCDS39106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39106.1 Public Mus musculus 5 Cox7b2 23 108 98 CCDS HistoryNCBI Gene:78174Re-query CCDS DB by CCDS ID:39106.1Re-query CCDS DB by GeneID:78174See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050129.5 ENSMUSP00000060890.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050129.5Link to Ensembl Protein Viewer:ENSMUSP00000060890.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050129Re-query CCDS DB by Protein ID:ENSMUSP00000060890
Original member Current member NCBI NM_030052.3 NP_084328.1 Accepted alive Link to Nucleotide Sequence:NM_030052.3Link to Protein Sequence:NP_084328.1Re-query CCDS DB by Nucleotide ID:NM_030052Re-query CCDS DB by Protein ID:NP_084328Link to BLAST:NP_084328.1

Chromosomal Locations for CCDS 39106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 71442965 71443213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGATGTTTCCCTTGGCCAGATATGCACTAAACTATCTCAAGACTCCAAGCATTCTGAAAATTGTGGGAA
GACTGAAACACTCAAAGCCCTCATCAGAAGAAACTCATGACAAATACGGCAATATGATGCTAATTAGTGG
GACTATTTTCTGTTTAGCTGGATATACAATTTATATGACACAGATGGGTGTGGAGTGGAACCTGTCTCCT
ATTGGCAGAGTTACCCCCCAAGAGTGGAAGAAGAAGTAA

Translation (82 aa):
MMFPLARYALNYLKTPSILKIVGRLKHSKPSSEETHDKYGNMMLISGTIFCLAGYTIYMTQMGVEWNLSP
IGRVTPQEWKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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