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Report for CCDS17986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17986.1 Public Mus musculus 4 Nbn 23 108 98 CCDS HistoryNCBI Gene:27354Re-query CCDS DB by CCDS ID:17986.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029879.14 ENSMUSP00000029879.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029879.14Link to Ensembl Protein Viewer:ENSMUSP00000029879.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029879Re-query CCDS DB by Protein ID:ENSMUSP00000029879
Original member Current member NCBI NM_013752.3 NP_038780.3 Accepted alive Link to Nucleotide Sequence:NM_013752.3Link to Protein Sequence:NP_038780.3Re-query CCDS DB by Nucleotide ID:NM_013752Re-query CCDS DB by Protein ID:NP_038780Link to BLAST:NP_038780.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038780.3 751 Q9R207 751 100% 0 0

Chromosomal Locations for CCDS 17986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15958074 15958110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15962311 15962444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15963772 15963920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15964247 15964406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15965134 15965237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15969341 15969458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15970721 15970914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15971766 15971863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15976035 15976164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15979141 15979413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15981307 15981748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15983954 15984022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15986509 15986664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15989002 15989115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15991182 15991231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15992434 15992461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGTGGAAGCTGCTCCCGGCCGCCGGTGCGGCTCCAGGAGAACCATACCGACTTTTGGCCGGCGTGGAGT
ACGTTGTTGGGAGGAAAAACTGTGGCATTCTGATTGAAAATGATCAGTCAATCAGTCGAAACCATGCTGT
CTTAACAGTAAACTTCCCTGTAACCAGTTTGAGTCAAACAGATGAAATTCCTACATTAACAATAAAAGAT
AATTCTAAGTATGGAACCTTTGTTAATGAAGAAAAAATGCAGACTGGTCTTTCCTGCACGTTGAAGACAG
GAGATAGAGTTACCTTTGGGGTGTTTGAAAGTAAATTCAGAGTAGAATACGAGCCCTTGGTTGTTTGTTC
TTCTTGTTTAGATGTCTCTGGGAAAACTGTTTTAAATCAAGCTATTTTACAGCTTGGAGGACTTACCGCA
AACAACTGGACGGAAGAATGTACCCACCTTGTCATGTCGGCAGTTAAAGTCACCATTAAAACTATATGTG
CACTCATTTGTGGACGTCCAATTATAAAACCAGAATACTTTTCTGAATTTCTCAAAGCAGTTGAATCTAA
GAAACAGCCTCCAGATATTGAAAGTTTTTACCCACCCATTGATGAACCAGCTATTGGAAGTAAAAGTGTT
GATCTGTCAGGGCGACATGAAAGAAAACAGATCTTCAAAGGAAAAACATTTGTGTTTTTAAATGCCAAGC
AGCACAAGAAACTCAGCTCGGCAGTTGCTTTCGGAGGTGGAGAAGCCAGGCTGATGGCAGAAGACGACGA
AGAGGAACAGAGCTTCTTTTCAGCTCCCGGAACCTGCGTTGTTGATGTAGGAATAACGAATACACAGCTC
ATAATTTCACACTCCCAGAAAAAATGGATTCATTTGATAATGGATACACTTCAAAGGAATGGTCTCAGAC
CTATTCCTGAAGCGGAGATTGGATTGGCTGTTATTTTTATGACTACAGAGAATTACTGTAATCCGCAGGG
CCAGCCTTGTACAGAATTAAAGACAACGACTCCAGGACCAAGCCTTTCCCAAGTCCTGTCAGCCAATGGA
AAAATAATCCCAAGTGCTCCAGTGAATATGACCACATACGTAGCTGACACAGAATCAGAGCCAGCAGATA
CATGTATGCCTTTGAGTGAAAGACCAGAAGAAGTAAAGATCCCTGGACTGGAACAAAGCTCTAGGAAACT
TTCACAAGAAACATTCAATATAAAGGAGGCCCCTAAACCAAGCTCCAAAGCTAACAACGTAGCATCAGAT
ACGCTGGTTAGAGGAAAGACCCCGAGCTATCAGCTTTCTCCAATGAAATTTCCTGTTGCAAATAAAAATA
AGGATTGGACTTCTCAGCAGCAGCAGAACTCCATCAAAAACTACTTCCAGCCATGCACCAGAAAAAGGGA
AAGGGATGAAGACAACCCAGAGCTGTCCTCGTGCAAATCATCCAGGATGGAGCTGTCCTGTTCTCTTTTA
GAACAAACACAACCTGCCGGACCCTCACTGTGGAAAAGCAAGGAGCATCAGTCTCAGAATGCGACCCTGG
ACAGGGAAGCCGACACCTCATCTGTGGGTGGGATGGACATAGAACTCAACAGGAAGAGTCCTGACAGGAA
ACCACTTCCCACAGAAACTCTTAGACCCAGAAAAAGAAAAGATGTTGATTTAGCTACAGAAGAGGAAGTC
TTGGAAGAGTTACTGAGGAGTACAAAGCCAGAGTTGGCAGTTCAAGTGAAGGTTGAAAAGCAGGAGGCAG
ATGACACCATCAGAAAAAAGCCAAGGATGGACGCAGAGAGGAATCGGCCCCTGAATGGTGGATCAGAGCC
GGAAAGCAACAGCGCTCTTCAAGAAGATGAAAGAGAAAAGAAAGATGAACTTCAGACAGAGTCGTGGTCA
ACAAAACATGAAATAGCTAATAGTGATGGTCTTCAGGACAGCAGTGAGGAGCTGCCACGGAAACTGCTGC
TGACTGAATTTAGGTCATTGGTTGTCAGTAACCACAACTCCACCTCCAGAAATCTATGTGTAAATGAATG
TGGTCCACTGAAGAATTTCAAGAAATTCAAGAAGGCGACATTTCCTGGGGCAGGAAAGCTTCCACACATC
ATCGGAGGATCAGACTTAGTAGGCCACCATGCTCGAAAGAATACCGAGTTAGAAGAATGGTTGAAACAGG
AAATGGAGGTACAGAAACAACAAGCAAAGGAGGAATCTCTTGCTGATGATCTGTTTAGATATAATCCTAA
TGTAAAAAGAAGATAA

Translation (751 aa):
MWKLLPAAGAAPGEPYRLLAGVEYVVGRKNCGILIENDQSISRNHAVLTVNFPVTSLSQTDEIPTLTIKD
NSKYGTFVNEEKMQTGLSCTLKTGDRVTFGVFESKFRVEYEPLVVCSSCLDVSGKTVLNQAILQLGGLTA
NNWTEECTHLVMSAVKVTIKTICALICGRPIIKPEYFSEFLKAVESKKQPPDIESFYPPIDEPAIGSKSV
DLSGRHERKQIFKGKTFVFLNAKQHKKLSSAVAFGGGEARLMAEDDEEEQSFFSAPGTCVVDVGITNTQL
IISHSQKKWIHLIMDTLQRNGLRPIPEAEIGLAVIFMTTENYCNPQGQPCTELKTTTPGPSLSQVLSANG
KIIPSAPVNMTTYVADTESEPADTCMPLSERPEEVKIPGLEQSSRKLSQETFNIKEAPKPSSKANNVASD
TLVRGKTPSYQLSPMKFPVANKNKDWTSQQQQNSIKNYFQPCTRKRERDEDNPELSSCKSSRMELSCSLL
EQTQPAGPSLWKSKEHQSQNATLDREADTSSVGGMDIELNRKSPDRKPLPTETLRPRKRKDVDLATEEEV
LEELLRSTKPELAVQVKVEKQEADDTIRKKPRMDAERNRPLNGGSEPESNSALQEDEREKKDELQTESWS
TKHEIANSDGLQDSSEELPRKLLLTEFRSLVVSNHNSTSRNLCVNECGPLKNFKKFKKATFPGAGKLPHI
IGGSDLVGHHARKNTELEEWLKQEMEVQKQQAKEESLADDLFRYNPNVKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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