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Report for CCDS27446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27446.1 Public Mus musculus 15 Lrp12 23 108 98 CCDS HistoryNCBI Gene:239393Re-query CCDS DB by CCDS ID:27446.1Re-query CCDS DB by GeneID:239393See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022916.12 ENSMUSP00000022916.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022916.12Link to Ensembl Protein Viewer:ENSMUSP00000022916.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022916Re-query CCDS DB by Protein ID:ENSMUSP00000022916
Original member Current member NCBI NM_172814.4 NP_766402.1 Accepted alive Link to Nucleotide Sequence:NM_172814.4Link to Protein Sequence:NP_766402.1Re-query CCDS DB by Nucleotide ID:NM_172814Re-query CCDS DB by Protein ID:NP_766402Link to BLAST:NP_766402.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766402.1 858 Q8BUJ9-1 858 100% 0 0

Chromosomal Locations for CCDS 27446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39872015 39872878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39876087 39876219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39877795 39878899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39880120 39880322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39885006 39885141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39904539 39904595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39943604 39943682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGCCCGTCGCTGGAGCACAAAAGAGTCTCAGCGGCGGGGGTCGGCGTGGCTCTTGCTTTTCCTCGCTG
GGGTGTACGGAAATGGTGCTCTTGCAGAACTTTCTGAAAATGTGCATATTTCAGGAGTGTCAACTGCTTG
TGGGGAGAGTCCAGAACAAATTCGAGCACCGAGTGGAATAATCACGAGTCCAGGCTGGCCTTCAGACTAT
CCTGCCCAAGTCAACTGCAGCTGGCTCATAAGGGCAAACCCAGGGGAGATCATTACTATAAGTTTTCAGG
ATTTTGATATCCAGGGGTCCAGAAGATGCACTTTGGACTGGCTGACAATAGAAACATACAAGAATATTGA
AAGTTACCGAGCGTGTGGGTCCACAATTCCGCCACCATATATCTCTTCCCAAGACCACGTTTGGATCCGG
TTCCACTCAGATGACAGCGTGTCCAGGAAAGGCTTCAGGCTGGCGTATTTTTCAGGGAAATCTGAGCAGC
CAGACTGTGCCTGTGATCAGTTCCGCTGTGGAAATGGAAAGTGTATTCCAGAAGCCTGGAAGTGCAACAG
CATGGACGAGTGTGGAGACAGTTCTGACGAGGAGGTCTGTGCCAGCGATGCTCACCCCCCAACCACGACT
GCTTTCCAACCCTGTGCCTACAACCAGTTCCAGTGTCTGTCCCGCTTCACCAAAGTTTACACGTGTCTCC
CTGAGTCCTTAAAGTGTGATGGGAACATTGACTGCCTGGACCTAGGAGACGAGATAGACTGTGACATGCC
GACATGCGGACAATGGTTAAAATACTTCTATGGCACCTTCAATTCTCCCAACTACCCCGACTTTTATCCT
CCTGGAAGTAACTGCACCTGGCTGATAGACACTGGTGATCATCGGAAAGTCATCTTACGGTTCACTGACT
TTAAACTTGATGGTACCGGGTATGGTGATTATGTCAAAATATATGACGGACTGGAGGAGAATCCTCGCAA
GCTCTTGCGGGTGCTAACTGCTTTCGATTCTCACGCTCCTCTGACGGTCGTTTCTTCCTCCGGACAGATA
AGAGTACATTTCTGTGCTGATAAAGTGAATGCTGCAAGAGGGTTCAACGCTACTTACCAAGTCGATGGCT
TCTGTTTGCCATGGGAAATACCCTGTGGGGGCAACTGGGGGTGCTACACAGAGCAGCAGCGCTGTGACGG
GTACTGGCATTGCCCAAACGGAAGGGATGAAATCAATTGTACCATGTGCCAAAAGGAAGAATTTCCATGT
TCTCGAAATGGTGTCTGCTACCCTCGTTCTGATCGCTGCAACTACCAAAACCATTGTCCGAACGGCTCTG
ATGAAAAAAACTGCTTCTTTTGCCAGCCAGGGAATTTCCACTGTAAGAACAACCGCTGTGTGTTTGAAAG
CTGGGTGTGTGATTCCCAGGATGACTGCGGTGACGGCAGTGACGAGGAGAACTGCCCAGTCATTGTGCCT
ACCAGAGTCATAACAGCAGCAGTCATCGGGAGCCTCATCTGTGGCCTGCTGCTCGTCATTGCATTGGGGT
GCACTTGCAAGCTTTATTCTCTGAGAATGTTTGAACGGAGATCATTTGAGACCCAGTTGTCACGCGTGGA
AGCAGAACTTCTCCGAAGAGAGGCTCCTCCCTCATATGGACAGTTGATCGCTCAGGGACTAATCCCACCC
GTAGAAGATTTTCCTGTCTGTTCACCTAATCAGGCTTCCGTTTTAGAAAACCTGAGGCTAGCTGTCCGAT
CTCAGCTGGGATTTACTTCAATCAGGCTTCCTATGACAGGCAGATCTAGCAACATTTGGAATCGTATTTT
TAATTTTGCAAGATCCCGTCATTCAGGGTCATTGGCTTTGGTCTCGGGAGATGGAGATGAGGTTGTCCCT
AGCCAGAGCAGCAGCAGAGAAACTGAGAGGAGTCGCCCTCACAGAAGCTTATTCTCCGTGGAGTCCGATG
ACACTGACACAGAAAATGAGAGAAGGGATACGGCGGGAGCATCGGGTGGGGTTGCAGCACCGTTGCCCCA
GAAGGTCCCTCCCACGACCGCCGTGGAGGCCACAGTGGGATCAGGTGGGAATTCCTCTGCTCAGAGCACC
AGAGGTGGCCATGCAGATGGAAGGGAAGTGTCAAGTGTGGAAGCCCCGAGTGTGAGCCCAGCACGTCACC
AGCTCACAAGTGCTTTAAGTCGGATGACTCAGGGCCTGCGCTGGGTCCGCTTTACACTAGGTCGATCGAG
CTCCACTACCCAGAACCGGAGTCCTTTGAGACAGCTGGACACCGCAGTGAGTGGACGAGAAGACGACGAT
GACGTCGAAATGCTAATTCCAGTTTCAGACGGAGCTTCGGACATTGATGCCAATGACTGCTCCAGACCTC
TTCTTGACCTTGCCTCAGACCAAGTACAAGGGTTTAGACAGCCACACAGTGCAGGAAACCCTGGAGTGAG
AACAAGTAACCGGGACGGCCCCTGCGAGCGCTGTGGCATTGTGCACACAGCCCAGATACCAGACACTTGC
TTAGAAGCCACAGTGAAGACGGAAACGAGTGATGACGAGGCTTTGCTGCTGTGTTAG

Translation (858 aa):
MARRWSTKESQRRGSAWLLLFLAGVYGNGALAELSENVHISGVSTACGESPEQIRAPSGIITSPGWPSDY
PAQVNCSWLIRANPGEIITISFQDFDIQGSRRCTLDWLTIETYKNIESYRACGSTIPPPYISSQDHVWIR
FHSDDSVSRKGFRLAYFSGKSEQPDCACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVCASDAHPPTTT
AFQPCAYNQFQCLSRFTKVYTCLPESLKCDGNIDCLDLGDEIDCDMPTCGQWLKYFYGTFNSPNYPDFYP
PGSNCTWLIDTGDHRKVILRFTDFKLDGTGYGDYVKIYDGLEENPRKLLRVLTAFDSHAPLTVVSSSGQI
RVHFCADKVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDEINCTMCQKEEFPC
SRNGVCYPRSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENCPVIVP
TRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAELLRREAPPSYGQLIAQGLIPP
VEDFPVCSPNQASVLENLRLAVRSQLGFTSIRLPMTGRSSNIWNRIFNFARSRHSGSLALVSGDGDEVVP
SQSSSRETERSRPHRSLFSVESDDTDTENERRDTAGASGGVAAPLPQKVPPTTAVEATVGSGGNSSAQST
RGGHADGREVSSVEAPSVSPARHQLTSALSRMTQGLRWVRFTLGRSSSTTQNRSPLRQLDTAVSGREDDD
DVEMLIPVSDGASDIDANDCSRPLLDLASDQVQGFRQPHSAGNPGVRTSNRDGPCERCGIVHTAQIPDTC
LEATVKTETSDDEALLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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