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Report for CCDS22001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22001.1 Public Mus musculus 7 Ptdss2 23 108 98 CCDS HistoryNCBI Gene:27388Re-query CCDS DB by CCDS ID:22001.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026568.9 ENSMUSP00000026568.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026568.9Link to Ensembl Protein Viewer:ENSMUSP00000026568.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026568Re-query CCDS DB by Protein ID:ENSMUSP00000026568
Original member NCBI NM_013782.4 NP_038810.2 Updated not alive Link to Nucleotide Sequence:NM_013782.4Link to Protein Sequence:NP_038810.2Re-query CCDS DB by Nucleotide ID:NM_013782Re-query CCDS DB by Protein ID:NP_038810
Current member NCBI NM_013782.5 NP_038810.2 Accepted alive Link to Nucleotide Sequence:NM_013782.5Link to Protein Sequence:NP_038810.2Re-query CCDS DB by Nucleotide ID:NM_013782Re-query CCDS DB by Protein ID:NP_038810Link to BLAST:NP_038810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038810.2 473 Q9Z1X2-1 473 100% 0 0

Chromosomal Locations for CCDS 22001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141131402 141131517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141135309 141135410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141143093 141143175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141147081 141147148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141151650 141151784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141152192 141152242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141152775 141152888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141152975 141153093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141154353 141154467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141154557 141154702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141154811 141154996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141155334 141155520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGCGGAGGGGCGAGCGCAGAGTCGCCGGAGGCTCGGGATCTGAGTCTCCGCTGCTCAAGGGCCGCCGCA
GCACCGAGTCTGAAGTCTACGACGATGGCACTAACACCTTCTTTTGGCGTGCCCACACTTTAACTGTGCT
GTTCATCCTCACCTGTGCGCTGGGCTACGTGACTCTCCTAGAAGAAACCCCTCAGGATACAGCCTACAAC
ACCAAGAGAGGTATTGTGGCCAGTATTTTGGTTTTCTTATGTTTTGGAGTCACACAAGCTAAAGACGGGC
CATTTTCCAGACCTCATCCAGCTTACTGGCGGTTTTGGCTGTGTGTTAGTGTGGTCTACGAATTGTTTCT
CATCTTCATCCTTTTCCAGACAGTCCAGGATGGCCGACAGTTTCTGAAGTATGTGGATCCCAGGCTGGGA
GTCCCATTGCCAGAGAGGGACTACGGGGGCAACTGCCTCATCTATGATGCTGACAACAAGACTGACCCTT
TCCACAACATCTGGGACAAGCTGGATGGCTTTGTTCCTGCACACTTCATTGGCTGGTATCTGAAGACGCT
CATGATCCGTGACTGGTGGATGTGCATGATCATCAGTGTGATGTTCGAGTTCCTGGAGTACAGCCTGGAG
CACCAGCTGCCCAACTTCAGCGAGTGCTGGTGGGACCATTGGATCATGGACGTCCTCGTCTGCAACGGGC
TGGGCATCTACTGTGGCATGAAGACCCTCGAGTGGCTGTCCCTGAAGACATATAAGTGGCAGGGCCTCTG
GAACATTCCAACCTACAAGGGCAAGATGAAGAGGATTGCCTTTCAGTTCACGCCTTACAGCTGGGTACGC
TTTGAGTGGAAGCCAGCCTCCAGCCTGCACCGCTGGCTGGCCGTGTGTGGCATCATCCTGGTGTTCCTGC
TGGCAGAGCTGAACACCTTCTACCTGAAGTTTGTGCTATGGATGCCCCCTGAACACTACCTGGTCCTTCT
GAGGCTGGTCTTCTTCGTGAACGTGGGTGGTGTGGCCATGCGTGAGATCTACGACTTCATGGATGAATTG
AAGCCCCACAGGAAGCTGGGCCAGCAGGCCTGGCTGGTGGCAGCCATCACAGTCACAGAGCTTCTCATCG
TGGTGAAGTATGACCCGCACACACTCACCCTGTCACTGCCCTTCTACATCTCCCAGTGCTGGACTCTTGG
CTCCATCCTGGTGCTTACATGGACTGTCTGGCGCTTCTTCCTGCGGGACATCACCATGAGGTACAAGGAG
ACCCGGCGACAGAAGCAGCAGAGTCACCAGGCCAGAGCCGTCAACAACCGGGATGGGCACCCTGGGCCAG
ATGATGACCTGCTAGGGACTGGAACTGCAGAAGAAGAGGGGACCACCAATGACGGTGTGACTGCTGAGGA
GGGGACCTCAGCCGCGTCATGA

Translation (473 aa):
MRRGERRVAGGSGSESPLLKGRRSTESEVYDDGTNTFFWRAHTLTVLFILTCALGYVTLLEETPQDTAYN
TKRGIVASILVFLCFGVTQAKDGPFSRPHPAYWRFWLCVSVVYELFLIFILFQTVQDGRQFLKYVDPRLG
VPLPERDYGGNCLIYDADNKTDPFHNIWDKLDGFVPAHFIGWYLKTLMIRDWWMCMIISVMFEFLEYSLE
HQLPNFSECWWDHWIMDVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWNIPTYKGKMKRIAFQFTPYSWVR
FEWKPASSLHRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGVAMREIYDFMDEL
KPHRKLGQQAWLVAAITVTELLIVVKYDPHTLTLSLPFYISQCWTLGSILVLTWTVWRFFLRDITMRYKE
TRRQKQQSHQARAVNNRDGHPGPDDDLLGTGTAEEEGTTNDGVTAEEGTSAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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