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Report for CCDS48675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48675.1 Public Mus musculus 10 Tmcc3 23 108 98 CCDS HistoryNCBI Gene:319880Re-query CCDS DB by CCDS ID:48675.1Re-query CCDS DB by GeneID:319880See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117929.1 ENSMUSP00000112401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117929.1Link to Ensembl Protein Viewer:ENSMUSP00000112401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117929Re-query CCDS DB by Protein ID:ENSMUSP00000112401
Original member Current member EBI ENSMUST00000117460.7 ENSMUSP00000112669.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117460.7Link to Ensembl Protein Viewer:ENSMUSP00000112669.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117460Re-query CCDS DB by Protein ID:ENSMUSP00000112669
Original member Current member EBI ENSMUST00000121471.7 ENSMUSP00000113122.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121471.7Link to Ensembl Protein Viewer:ENSMUSP00000113122.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121471Re-query CCDS DB by Protein ID:ENSMUSP00000113122
Original member Current member NCBI NM_001168684.1 NP_001162155.1 Accepted alive Link to Nucleotide Sequence:NM_001168684.1Link to Protein Sequence:NP_001162155.1Re-query CCDS DB by Nucleotide ID:NM_001168684Re-query CCDS DB by Protein ID:NP_001162155Link to BLAST:NP_001162155.1
Original member Current member NCBI NM_001359760.1 NP_001346689.1 Accepted alive Link to Nucleotide Sequence:NM_001359760.1Link to Protein Sequence:NP_001346689.1Re-query CCDS DB by Nucleotide ID:NM_001359760Re-query CCDS DB by Protein ID:NP_001346689Link to BLAST:NP_001346689.1
Original member Current member NCBI NM_001359761.1 NP_001346690.1 Accepted alive Link to Nucleotide Sequence:NM_001359761.1Link to Protein Sequence:NP_001346690.1Re-query CCDS DB by Nucleotide ID:NM_001359761Re-query CCDS DB by Protein ID:NP_001346690Link to BLAST:NP_001346690.1
Original member Current member NCBI NM_177026.1 NP_796000.1 Accepted alive Link to Nucleotide Sequence:NM_177026.1Link to Protein Sequence:NP_796000.1Re-query CCDS DB by Nucleotide ID:NM_177026Re-query CCDS DB by Protein ID:NP_796000Link to BLAST:NP_796000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162155.1 446 Q8R310-2 446 100% 0 0
NP_001346689.1 446 Q8R310-2 446 100% 0 0
NP_001346690.1 446 Q8R310-2 446 100% 0 0
NP_796000.1 446 Q8R310-2 446 100% 0 0

Chromosomal Locations for CCDS 48675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94578438 94579339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94582274 94582409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94586728 94587030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGAATACCCTCAGCCTACCCCTGAACATACGCCGAGGGGGATCAGACACCAACCTCAACTTCGATGTCC
CCGATGGCATCCTGGATTTCCACAAGGTCAAACTCAATGCGGACAGCCTGAGACAAAAAATCTTAAAGGT
GACGGAGCAGATAAAGATCGAGCAGACGTCCCGAGATGGGAACGTTGCAGAGTATCTGAAACTGGTCAGC
AGTGCAGACAAGCAGCAGGCTGGACGCATCAAGCAGGTCTTTGAGAAGAAAAACCAGAAGTCAGCCCACT
CCATCGCCCAACTTCAGAAGAAGTTGGAGCAGTATCACAGAAAGCTCAGGGAGATCGAACAGAATGGCGT
GACCAGGAGCTCAAAGGACATCTCTAAAGACAGCCTGAAGGAAATACACCACTCTCTGAAGGATGCCCAC
GTGAAATCTCGAACTGCTCCCCACTGCCTGGAGAGCAGTAAATCTAGCATGCCAGGGGTATCCCTCACGC
CCCCCGTGTTTGTCTTCAATAAGTCCAGAGAGTTTGCCAACTTGATCCGGAATAAGTTTGGCAGTGCAGA
TAACATTGCTCACTTGAAGAATTCCCTGGAAGAGTTCAGGCCCGAAGCCAGCCCCAGGGCTTACGGCGGA
AGCGCTACCATCGTGAACAAACCTAAGTACGGCAGCGATGACGAATGTTCTAGTGGCACATCCGGCTCAG
CGGACAGCAATGGGAACCAGTCCTTTGGGGCTGGTGGGACCAGCACCCTGGACAGCCAGGGGAAGATTGC
CAAGATCATGGAGGAACTGAGGGAGATCAAGGTTACCCAAACCCAGCTGGCGGAAGACATCGAGGCACTG
AAGGTGCAGTTTAAGAGAGAATATGGCTTTATCTCTCAGACTCTGCAAGAGGAGAGATACAGGTATGAGC
GACTTGAAGACCAGCTCCATGACCTGACAGAGCTGCACCAGCATGAGACAGCCAATCTGAAGCAGGAATT
GGCCAGCGCTGAGGAGAAGGTGGCCTACCAGGCCTATGAGCGCTCAAGGGACATCCAGGAAGCCTTGGAA
TCTTGCCAGACCCGCATCTCTAAGCTCGAGCTGCATCAGCAGGAACAGCAGACCCTGCAGACGGATGCCG
TGAACGCCAAGGTCCTGCTGGGGAAGTGCATCAACGTGGTTCTGGCCTTCATGACGGTCATCCTGGTGTG
TGTGTCCACCCTGGCCAAGTTTGTCTCGCCCATGATGAAGAGCCGCTCCCACATCCTTGGCACCTTCTTT
GCTGTGACTCTTCTCGCCATATTCTGTAAAAACTGGGACCATATCTTGTGTGCCATAGAAAGGATAATCA
TCCCGAGATGA

Translation (446 aa):
MNTLSLPLNIRRGGSDTNLNFDVPDGILDFHKVKLNADSLRQKILKVTEQIKIEQTSRDGNVAEYLKLVS
SADKQQAGRIKQVFEKKNQKSAHSIAQLQKKLEQYHRKLREIEQNGVTRSSKDISKDSLKEIHHSLKDAH
VKSRTAPHCLESSKSSMPGVSLTPPVFVFNKSREFANLIRNKFGSADNIAHLKNSLEEFRPEASPRAYGG
SATIVNKPKYGSDDECSSGTSGSADSNGNQSFGAGGTSTLDSQGKIAKIMEELREIKVTQTQLAEDIEAL
KVQFKREYGFISQTLQEERYRYERLEDQLHDLTELHQHETANLKQELASAEEKVAYQAYERSRDIQEALE
SCQTRISKLELHQQEQQTLQTDAVNAKVLLGKCINVVLAFMTVILVCVSTLAKFVSPMMKSRSHILGTFF
AVTLLAIFCKNWDHILCAIERIIIPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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