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Report for CCDS27243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27243.1 Public Mus musculus 14 Tnfrsf10b 23 108 98 CCDS HistoryNCBI Gene:21933Re-query CCDS DB by CCDS ID:27243.1Re-query CCDS DB by GeneID:21933See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022663.6 ENSMUSP00000022663.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022663.6Link to Ensembl Protein Viewer:ENSMUSP00000022663.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022663Re-query CCDS DB by Protein ID:ENSMUSP00000022663
Original member Current member NCBI NM_020275.4 NP_064671.2 Accepted alive Link to Nucleotide Sequence:NM_020275.4Link to Protein Sequence:NP_064671.2Re-query CCDS DB by Nucleotide ID:NM_020275Re-query CCDS DB by Protein ID:NP_064671Link to BLAST:NP_064671.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064671.2 381 Q9QZM4 381 100% 0 0

Chromosomal Locations for CCDS 27243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69767660 69767791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69770781 69770877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69773377 69773487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69775086 69775194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69776072 69776268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69777721 69777815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69780504 69780573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69782232 69782566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGAGCCTCCAGGACCCAGCACGCCCACAGCCTCTGCCGCTGCCCGGGCAGATCACTACACCCCAGGCC
TCCGGCCACTCCCGAAGCGCAGACTTCTATATAGCTTTGCGTTGCTGCTTGCTGTGCTACAGGCTGTCTT
TGTTCCAGTAACAGCTAACCCAGCCCATAATCGTCCAGCTGGCCTACAGCGGCCGGAGGAGAGCCCATCA
AGAGGACCCTGTCTAGCAGGCCAGTACCTGTCAGAAGGGAACTGCAAGCCTTGCAGAGAGGGTATTGACT
ACACCAGCCATTCCAACCATTCTCTGGATTCATGTATTCTCTGCACAGTCTGTAAGGAAGATAAAGTCGT
AGAAACCCGATGCAACATAACCACAAATACGGTGTGTCGATGCAAACCAGGCACCTTTGAAGATAAAGAC
TCCCCTGAGATCTGCCAGTCATGCTCTAACTGCACTGACGGGGAAGAGGAACTGACTTCCTGTACCCCCA
GAGAAAACCGGAAGTGTGTCTCCAAAACGGCTTGGGCATCTTGGCATAAGCTAGGCCTCTGGATAGGACT
CCTGGTTCCAGTAGTGCTGCTGATTGGAGCTCTGCTTGTCTGGAAGACTGGAGCATGGAGGCAATGGTTG
CTCTGTATAAAAAGAGGCTGTGAACGGGATCCCGAAAGTGCGAACTCTGTGCATTCGTCTCTCTTGGACC
GACAGACATCTAGCACGACAAATGACTCTAACCACAACACGGAACCTGGCAAGACTCAGAAAACAGGAAA
GAAGTTGCTGGTTCCGGTAAACGGAAACGACTCAGCTGACGACCTGAAGTTTATCTTCGAGTATTGTTCG
GACATAGTGCCCTTTGACTCCTGGAACCGTCTCATGCGGCAGTTGGGCCTCACAGACAATCAAATCCAAA
TGGTCAAAGCCGAAACACTGGTCACACGTGAGGCCCTGTACCAAATGCTGCTCAAGTGGCGCCACCAGAC
TGGGCGAAGTGCCTCCATCAACCATCTGCTGGATGCCTTGGAAGCCGTGGAAGAGAGAGATGCCATGGAG
AAAATTGAAGACTACGCAGTGAAATCCGGGAGGTTTACTTATCAGAACGCTGCAGCCCAACCAGAGACAG
GGCCAGGAGGATCTCAGTGCGTTTGA

Translation (381 aa):
MEPPGPSTPTASAAARADHYTPGLRPLPKRRLLYSFALLLAVLQAVFVPVTANPAHNRPAGLQRPEESPS
RGPCLAGQYLSEGNCKPCREGIDYTSHSNHSLDSCILCTVCKEDKVVETRCNITTNTVCRCKPGTFEDKD
SPEICQSCSNCTDGEEELTSCTPRENRKCVSKTAWASWHKLGLWIGLLVPVVLLIGALLVWKTGAWRQWL
LCIKRGCERDPESANSVHSSLLDRQTSSTTNDSNHNTEPGKTQKTGKKLLVPVNGNDSADDLKFIFEYCS
DIVPFDSWNRLMRQLGLTDNQIQMVKAETLVTREALYQMLLKWRHQTGRSASINHLLDALEAVEERDAME
KIEDYAVKSGRFTYQNAAAQPETGPGGSQCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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