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Report for CCDS27604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27604.1 Public Mus musculus 15 Apol9b 23 108 98 CCDS HistoryNCBI Gene:71898Re-query CCDS DB by CCDS ID:27604.1Re-query CCDS DB by GeneID:71898See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109775.3 ENSMUSP00000105397.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109775.3Link to Ensembl Protein Viewer:ENSMUSP00000105397.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109775Re-query CCDS DB by Protein ID:ENSMUSP00000105397
Original member Current member EBI ENSMUST00000230979.1 ENSMUSP00000155314.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230979.1Link to Ensembl Protein Viewer:ENSMUSP00000155314.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230979Re-query CCDS DB by Protein ID:ENSMUSP00000155314
Original member Current member NCBI NM_001168660.1 NP_001162131.1 Accepted alive Link to Nucleotide Sequence:NM_001168660.1Link to Protein Sequence:NP_001162131.1Re-query CCDS DB by Nucleotide ID:NM_001168660Re-query CCDS DB by Protein ID:NP_001162131Link to BLAST:NP_001162131.1
Original member Current member NCBI NM_173743.4 NP_776104.1 Accepted alive Link to Nucleotide Sequence:NM_173743.4Link to Protein Sequence:NP_776104.1Re-query CCDS DB by Nucleotide ID:NM_173743Re-query CCDS DB by Protein ID:NP_776104Link to BLAST:NP_776104.1

Chromosomal Locations for CCDS 27604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77734508 77734590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77735089 77735938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCAAGCAGTGGATACCTGTATAGCCTGGTGGCTGAAGATGGAGCCTGGCAGGCGTTTGTATCCAAGG
CCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAGCTCTGAGGGAACTGACAGCGCTCTTGGCCAT
AGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAGGCAGGGAGAAGTTTTTGAAAGTCTTTCCTCGCTTG
AAAGCAGAGCTGGTGGAGCATATCAGTCAGCTCCATGCCCTGGCTGACCACGCTGAGAAACTACACAGGG
GCTGCACCATCTCCAACGTGGTGGCTGACTCCTTCAGTGCTGCCTCTGACATCCTGAGCCTCCTTGGTCT
CTTTCTGGCACCTGTGACAGCAGAGGGAAGTCTGGTGCTCTCAGCAACTGGCTTGGGGCTGGGGGTAGCA
GCTACTGTGACTGATGTTGCTACCTCAATCGTGGAGGAAACAAGCAGGGTTTTGGATGAAGTTGAAGCTG
CTCTGACTGGCACTCATGTGCTGGGGGAGGCTGGCACAAGTGTAGCTAGGATTGTCAACAAGATCCCTCA
GGCTACCAGAGACATCACCAGAGACCTGGAAGCCCTTGAGCAGCACATGAATGCCCTCAGGCTGGTTAGA
GCTAACCCTCGTTTAGAAGAAGATGCCAGGATCCTGGCCACCACAGGAAGCATCTCTGCCCAACGGGCTA
TGCAGGTGCGGGCCAGGCTGGAAGGAACCCCTCTGGCAATGAGCAATGAAGCCCGGATCCAACGTGCCGC
CACCGCAGGTGCCGCCCTCTGGAGTGACGTGGACAGCCTTGTCAAAGAGTCAAAGCATCTGTACGAAGGG
TCTGCGTCAGAGTCGGCTGAAGCACTGAGGAAGCTGGCTCGAGAGCTGGAGGAGAAGCTAGAGGGGCTCA
TGGAATTCTACAAGACGATCTGA

Translation (310 aa):
MASSGYLYSLVAEDGAWQAFVSKAKLSRERAVALHKALRELTALLAIADRGRLQKGLKGREKFLKVFPRL
KAELVEHISQLHALADHAEKLHRGCTISNVVADSFSAASDILSLLGLFLAPVTAEGSLVLSATGLGLGVA
ATVTDVATSIVEETSRVLDEVEAALTGTHVLGEAGTSVARIVNKIPQATRDITRDLEALEQHMNALRLVR
ANPRLEEDARILATTGSISAQRAMQVRARLEGTPLAMSNEARIQRAATAGAALWSDVDSLVKESKHLYEG
SASESAEALRKLARELEEKLEGLMEFYKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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