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Report for CCDS22466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22466.1 Public Mus musculus 8 Rln3 23 108 98 CCDS HistoryNCBI Gene:212108Re-query CCDS DB by CCDS ID:22466.1Re-query CCDS DB by GeneID:212108See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061923.4 ENSMUSP00000051392.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061923.4Link to Ensembl Protein Viewer:ENSMUSP00000051392.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061923Re-query CCDS DB by Protein ID:ENSMUSP00000051392
Original member Current member NCBI NM_173184.1 NP_775276.1 Accepted alive Link to Nucleotide Sequence:NM_173184.1Link to Protein Sequence:NP_775276.1Re-query CCDS DB by Nucleotide ID:NM_173184Re-query CCDS DB by Protein ID:NP_775276Link to BLAST:NP_775276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775276.1 141 Q8CHK2 141 100% 0 0

Chromosomal Locations for CCDS 22466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84043093 84043331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84044770 84044956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGCAATGCTCGGGCTGCTGCTGCTGGCTTCCTGGGCTCTCCTCGGGGCTCTGGGGCTGCAGGCCGAGG
CG
AGGCCGGCGCCCTACGGGGTGAAGCTCTGCGGTCGGGAGTTCATCCGCGCGGTCATCTTCACTTGCGG
A
GGCTCACGATGGCGCCGGGCGGACATCTTGGCCCACGAATCTCTGGGGGACTTCTTCGCTGATGGAGAA
GCC
AATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGTGGGCTCCAGCGAGTGGCTGGCCCTAACCA
AA
TCCCCCCAGGCTTTCTACGGTGGTCGAGCCAGCTGGCAAGGGTCACCTGGAGTGGTTCGGGGCAGCAG
A
GATGTGTTGGCTGGCCTTTCCAGCAGTTGCTGCGAGTGGGGCTGTAGCAAGAGCCAAATTAGCAGCTTG
TGC
TAG


Translation (141 aa):
MAMLGLLLLASWALLGALGLQAEARPAPYGVKLCGREFIRAVIFTCGGSRWRRADILAHESLGDFFADGE
A
NTDHLASELDEAVGSSEWLALTKSPQAFYGGRASWQGSPGVVRGSRDVLAGLSSSCCEWGCSKSQISSL
C




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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