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Report for CCDS25100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25100.1 Public Mus musculus 11 Pigs 23 108 98 CCDS HistoryNCBI Gene:276846Re-query CCDS DB by CCDS ID:25100.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048073.8 ENSMUSP00000044871.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048073.8Link to Ensembl Protein Viewer:ENSMUSP00000044871.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048073Re-query CCDS DB by Protein ID:ENSMUSP00000044871
Original member NCBI NM_201406.1 NP_958808.1 Updated not alive Link to Nucleotide Sequence:NM_201406.1Link to Protein Sequence:NP_958808.1Re-query CCDS DB by Nucleotide ID:NM_201406Re-query CCDS DB by Protein ID:NP_958808
Current member NCBI NM_201406.2 NP_958808.1 Accepted alive Link to Nucleotide Sequence:NM_201406.2Link to Protein Sequence:NP_958808.1Re-query CCDS DB by Nucleotide ID:NM_201406Re-query CCDS DB by Protein ID:NP_958808Link to BLAST:NP_958808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958808.1 555 Q6PD26 555 100% 0 0

Chromosomal Locations for CCDS 25100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78328475 78328508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78328732 78328871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78328975 78329086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78332950 78333039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78333667 78333758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78335427 78335634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78336688 78336830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78337789 78337903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78339343 78339488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78340009 78340109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78341225 78341435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78341734 78342009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCGGCCGCAGGAGCTGCGGCCACGGACCTAGAGGTGGTCCGGGGCAAGCGTTCCGCGCTTTTCTTCG
CCGCGGTGGCCATCCTTCTGGGACTGCCGCTCTGGTGGAAGACGACGGAGACTTACCGGGCCCCATTGCC
TTACTCAGACATCAGTGGGCTGAATGCTCTGCTGCTCCGGCTCATGGTGCCAGTCACAGTTGTGTTTACT
CGGGACTCTGTGCCCCTGGACGACCAAGAGAAGCTACCTTTCACCGTTGTGCATGAGCGAGAGATCCCTC
TGAAATACAAGATGAAAATCAAGTGCCGTTTCCAGAAGGCCTACCGGAGAGCTTTGGAGCACGAGGAGGA
GGCGCTGTCCCTGGGCAGTGTGCACGAGGCAGAAGCCATGTTAGCTGAGCCGGAGAAGCAAGCTGAGGGC
TCCTTGACTGTGTATGTGATCTCGGAGCACTCCTCCCTTCTTCCCCAGGACATGATGAGCTACATTGGGC
CTGAGAGGACGGCAGTTGTCCGGGGGCTGATCCACAGGGAAGCCTTCAACATCATCGGCCGTCGCATAGT
CCAGGTCGCCCAGGCCATGTCCTTGACGGAGGATGTGCTTGCTGCTGCCTTGGCCGACCACCTGCCCGAG
GACAAGTGGAGCTCTGACAAGAGGCGGCCGCTCAAGTCCAGCTTAGGCTATGAAATCACTTTCAGTTTAC
TCAACCCAGACCCCAAGTCCCACGATGTCCACTGGGACATTGAGGGAGCTGTCCAGCGCTTTGTGCAGCC
TTTCCTGAATCGCCTCAGTGTTGCGGGCAATTTCTCTGTGGACTCTCAGATCCTATACTATGCCATGCTC
GGCGTGAACCCCCGCTTTGACCCAGCCTCATCCAGCTACTCCTTGGCTATGCACAGCCTGCCCCACGTCA
TCAACCCAGTGGAGTCCCGACTCGGGTCCAGCGCTGCCTCCCTGTACCCTGTACTCCACTTTCTGCTCTA
TGTGCCTGAGCTTGCCCACTCCCCGCTGTACATTCAGGACAAGGACGGAGCTCCAGTGGCCACCAATGCC
TTCCACAGTCCCCGCTGGGGTGGCATTATGGTATACAATGTTGATCCGAAGATCTATAATGCTTCTGAGC
TGCCAGTGAGGGTTGAGGTGGACATGGTGCGGGTGATGGAGGTATTCCTGGCTCAGCTGAGGCTGCTCTT
TGGAATTGCTCAGCCCCAGGTGCCTCCCAAATGCCTGCTCTCAGGACCAAAGAGTGAAGGACTCATGACC
TGGGAGCTGGACCGATTGCTCTGGGCTCGCTCCGTGGAGAACCTGGCCACGGCCACCACCACCCTCACCT
CCCTGGCCCAGCTTCTGGGGAAGATCAGCAACATTGTCATCAAGGATGATGTGGCTTCTGAGGTATATAG
GGCTGTGGCTGCCGTCCAGAAGGCAGCAAAGGCCTTAGCCCTTGGGCACCTGTCGTCCGCCTTTGCTGCC
AGCCAGGAAGCCGTGACCTCCTCCGAGCGCGCCTTTTTTGACCCCTCCCTCCTCCACCTCTTGTATTTCC
CCGACGACCAGAAGTTTGCTATCTACATTCCCCTCTTCCTGCCCATGGCTGTGCCCATCCTCCTGTCCCT
GGTTAAGATCTTTCAGGAAACTCGCAAGTCCTGGAAAAAGCCTGAGAAGATAGACTGA

Translation (555 aa):
MAAAGAAATDLEVVRGKRSALFFAAVAILLGLPLWWKTTETYRAPLPYSDISGLNALLLRLMVPVTVVFT
RDSVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALEHEEEALSLGSVHEAEAMLAEPEKQAEG
SLTVYVISEHSSLLPQDMMSYIGPERTAVVRGLIHREAFNIIGRRIVQVAQAMSLTEDVLAAALADHLPE
DKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVQRFVQPFLNRLSVAGNFSVDSQILYYAML
GVNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLHFLLYVPELAHSPLYIQDKDGAPVATNA
FHSPRWGGIMVYNVDPKIYNASELPVRVEVDMVRVMEVFLAQLRLLFGIAQPQVPPKCLLSGPKSEGLMT
WELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAKALALGHLSSAFAA
SQEAVTSSERAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKIFQETRKSWKKPEKID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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